Construct: ORF ccsbBroadEn_09294
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014800.1_s300c1, BRDN0000392182
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TMEM41A (90407)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 90407 | TMEM41A | transmembrane protein 41A | NM_080652.4 | 100% | 100% | |
| 2 | human | 90407 | TMEM41A | transmembrane protein 41A | XM_017007437.1 | 79.5% | 79.5% | 272_273ins162 |
| 3 | human | 90407 | TMEM41A | transmembrane protein 41A | XR_924214.2 | 25.3% | 1_76del;869_3123del | |
| 4 | human | 90407 | TMEM41A | transmembrane protein 41A | XR_924212.2 | 24.1% | 1_76del;869_3281del | |
| 5 | human | 90407 | TMEM41A | transmembrane protein 41A | XR_924213.2 | 22.2% | 1_76del;869_3560del | |
| 6 | mouse | 66664 | Tmem41a | transmembrane protein 41a | NM_025693.4 | 84.3% | 89% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 858
- ORF length:
- 792
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCG CCCGCTTCTC GGCCTCCTTC TGGTCTTCGC CGGCTGCACC TTCGCCTTGT 121 ACTTGCTGTC GACGCGACTG CCCCGCGGGC GGAGACTGGG CTCCACCGAG GAGGCTGGAG 181 GCAGGTCGCT GTGGTTCCCC TCCGACCTGG CAGAGCTGCG GGAGCTCTCT GAGGTCCTTC 241 GAGAGTACCG GAAGGAGCAC CAGGCCTACG TGTTCCTGCT CTTCTGCGgc gccTACCTCT 301 ACAAACAGGG CTTTGCCATC CCCGGCTCCA GCTTCCTGAA TGTTTTAGCT GGTGCCTTGT 361 TTGGGCCATG GCTGGGGCTT CTGCTGTGCT GTGTGTTGAC CTCGGTGGGT GCCACATGCT 421 GCTACCTGCT CTCCAGTATT TTTGGCAAAC AGTTGGTGGT GTCCTACTTT CCTGATAAAG 481 TGGCCCTGCT GCAGAGAAAG GTGGAGGAGA ACAGAAACAG CTTGTTTTTT TTCTTATTGT 541 TTTTGAGACT TTTCCCCATG ACACCAAACT GGTTCTTGAA CCTCTCGGCC CCAATTCTGA 601 ACATTCCCAT CGTGCAGTTC TTCTTCTCAG TTCTTATCGG TTTGATCCCA TATAATTTCA 661 TCTGTGTGCA GACAGGGTCC ATCCTGTCAA CCCTAACCTC TCTGGATGCT CTTTTCTCCT 721 GGGACACTGT CTTTAAGCTG TTGGCCATTG CCATGGTGGC ATTAATTCCT GGAACCCTCA 781 TTAAAAAATT TAGTCAGAAA CATCTGCAAT TGAATGAAAC AAGTACTGCT AATCATATAC 841 ACAGTAGAAA AGACACATGC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt 901 gcttatcaat ttgttgcaac gaac