Transcript: Human XR_924212.2

PREDICTED: Homo sapiens transmembrane protein 41A (TMEM41A), transcript variant X1, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
TMEM41A (90407)
Length:
3281
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_924212.2
NBCI Gene record:
TMEM41A (90407)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_924212.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000140862 CATTCCCATCGTGCAGTTCTT pLKO.1 613 3UTR 100% 4.950 6.930 N TMEM41A n/a
2 TRCN0000122259 CTTCTCAGTTCTTATCGGTTT pLKO.1 634 3UTR 100% 4.050 5.670 N TMEM41A n/a
3 TRCN0000141121 CATGACACCAAACTGGTTCTT pLKO.1 568 3UTR 100% 4.950 3.960 N TMEM41A n/a
4 TRCN0000297934 CATGACACCAAACTGGTTCTT pLKO_005 568 3UTR 100% 4.950 3.960 N TMEM41A n/a
5 TRCN0000121621 GAGAACAGAAACAGCTTGTTT pLKO.1 518 3UTR 100% 5.625 3.938 N TMEM41A n/a
6 TRCN0000281103 GAGAACAGAAACAGCTTGTTT pLKO_005 518 3UTR 100% 5.625 3.938 N TMEM41A n/a
7 TRCN0000145211 GCTCTTGAAGGTGTATTACAT pLKO.1 1025 3UTR 100% 5.625 3.938 N TMEM41A n/a
8 TRCN0000281104 GCTCTTGAAGGTGTATTACAT pLKO_005 1025 3UTR 100% 5.625 3.938 N TMEM41A n/a
9 TRCN0000144399 CAGTTCTTCTTCTCAGTTCTT pLKO.1 626 3UTR 100% 4.950 3.465 N TMEM41A n/a
10 TRCN0000142581 GCAGTTCTTCTTCTCAGTTCT pLKO.1 625 3UTR 100% 4.950 3.465 N TMEM41A n/a
11 TRCN0000297933 GCAGTTCTTCTTCTCAGTTCT pLKO_005 625 3UTR 100% 4.950 3.465 N TMEM41A n/a
12 TRCN0000140339 CAAACAGTTGGTGGTGTCCTA pLKO.1 457 3UTR 100% 2.640 1.848 N TMEM41A n/a
13 TRCN0000222574 CGCCTGTAATCCCAGCACTTT pLKO.1 1132 3UTR 100% 4.950 2.475 Y ERAP2 n/a
14 TRCN0000078113 GCCTGTAATCCCAGCACTTTA pLKO.1 1133 3UTR 100% 13.200 6.600 Y LIAS n/a
15 TRCN0000256748 GGCAGGAGAATTGCTTGAATC pLKO_005 1296 3UTR 100% 10.800 5.400 Y SMIM11A n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_924212.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_09294 pDONR223 99.3% 24.1% None 1_76del;869_3281del n/a
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