Construct: ORF ccsbBroadEn_09303

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008281.1_s300c1, BRDN0000396839
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LRSAM1 (90678)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 90678 LRSAM1 leucine rich repeat and ste... NM_001005373.3 99.9% 99.8% 249C>T;952A>G
2 human 90678 LRSAM1 leucine rich repeat and ste... NM_001005374.3 99.9% 99.8% 249C>T;952A>G
3 human 90678 LRSAM1 leucine rich repeat and ste... NM_138361.5 99.9% 99.8% 249C>T;952A>G
4 human 90678 LRSAM1 leucine rich repeat and ste... XM_017015283.1 99.9% 99.8% 249C>T;952A>G
5 human 90678 LRSAM1 leucine rich repeat and ste... NM_001190723.3 96.1% 96.1% 249C>T;952A>G;1418_1419ins81
6 human 90678 LRSAM1 leucine rich repeat and ste... XM_006717316.4 95.3% 95.2% 249C>T;952A>G;1599_1600ins99
7 human 90678 LRSAM1 leucine rich repeat and ste... XR_929874.3 69.1% (many diffs)
8 human 90678 LRSAM1 leucine rich repeat and ste... XR_001746415.2 65.5% (many diffs)
9 human 90678 LRSAM1 leucine rich repeat and ste... XM_017015284.2 63.5% 63.4% 0_1ins789;163A>G
10 mouse 227738 Lrsam1 leucine rich repeat and ste... NM_199302.2 85.7% 87.6% (many diffs)
11 mouse 227738 Lrsam1 leucine rich repeat and ste... XM_006497969.3 85.7% 87.6% (many diffs)
12 mouse 227738 Lrsam1 leucine rich repeat and ste... XM_006497970.3 85.7% 87.6% (many diffs)
13 mouse 227738 Lrsam1 leucine rich repeat and ste... XM_006497971.3 85.7% 87.6% (many diffs)
14 mouse 227738 Lrsam1 leucine rich repeat and ste... XM_006497972.3 85.7% 87.6% (many diffs)
15 mouse 227738 Lrsam1 leucine rich repeat and ste... XM_006497962.3 82.2% 84% (many diffs)
16 mouse 227738 Lrsam1 leucine rich repeat and ste... XM_006497963.3 82.2% 84% (many diffs)
17 mouse 227738 Lrsam1 leucine rich repeat and ste... XM_006497964.3 82.2% 84% (many diffs)
18 mouse 227738 Lrsam1 leucine rich repeat and ste... XM_006497965.3 82.2% 84% (many diffs)
19 mouse 227738 Lrsam1 leucine rich repeat and ste... XM_006497966.3 82.2% 84% (many diffs)
20 mouse 227738 Lrsam1 leucine rich repeat and ste... XM_006497967.3 79.8% 81.5% (many diffs)
21 mouse 227738 Lrsam1 leucine rich repeat and ste... XM_006497968.3 78.9% 80.7% (many diffs)
22 mouse 227738 Lrsam1 leucine rich repeat and ste... XR_374086.2 54.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2235
ORF length:
2169
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGCC GCTCTTCTTC CGGAAGCGGA AACCCAGTGA GGAGGCTCGG AAACGCCTGG
121AGTACCAGAT GTGTTTGGCA AAAGAAGCTG GGGCAGATGA CATTCTCGAC ATCTCTAAAT
181GTGAGCTCTC AGAGATTCCA TTTGGAGCTT TTGCAACATG CAAAGTTCTG CAGAAGAAGG
241TGCTGATCGT CCACACGAAT CACCTCACTT CCCTGCTTCC CAAATCCTGC AGCCTCCTGA
301GTCTGGCAAC CATTAAGGTT CTAGATCTCC ACGATAATCA GCTGACAGCC CTTCCTGACG
361ATCTGGGGCA GCTGACTGCC CTCCAGGTCT TAAACGTGGA AAGGAATCAA CTGATGCAGC
421TCCCACGTTC CATTGGGAAC CTGACCCAGC TCCAGACTCT CAATGTTAAA GACAACAAGC
481TGAAGGAGCT TCCAGACACC GTGGGGGAGC TTCGAAGCCT GCGTACCCTC AACATCAGTG
541GAAACGAGAT CCAGAGATTG CCGCAGATGC TGGCTCACGT TCGAACCCTG GAGATGCTGA
601GCCTTGACGC CTCGGCCATG GTCTACCCGC CGCGGGAGGT GTGTGGTGCC GGCACTGCGG
661CCATCTTGCA GTTCCTCTGC AAAGAGTCAG GGCTGGAATA CTACCCCCCT TCTCAGTACT
721TGCTGCCAAT TCTGGAGCAA GATGGAATCG AGAACTCTCG GGACAGCCCT GATGGGCCCA
781CGGACAGATT CTCAAGGGAG GAGTTAGAGT GGCAGAACAG GTTCTCAGAC TATGAGAAGA
841GGAAGGAACA GAAGATGCTG GAGAAACTCG AGTTTGAACG GCGCCTGGAA CTGGGGCAGC
901GGGAGCACAC CCAGCTCCTT CAGCAGAGCA GCAGCCAGAA GGATGAGATC CTTCAGACGG
961TCAAGGAGGA GCAGTCCCGG CTGGAGCAGG GCCTGAGTGA GCACCAGCGC CACCTCGACG
1021CAGAGCGGCA GCGGCTGCAG GAGCAGCTGA AGCAGACGGA ACAGAACATT TCCAGCCGGA
1081TCCAGAAGCT GCTGCAGGAC AATCAGAGAC AAAAGAAAAG CTCCGAGATT TTGAAATCGC
1141TGGAAAATGA AAGAATAAGA ATGGAACAGT TGATGTCCAT AACCCAGGAG GAGACTGAGA
1201GCCTGCGGCG ACGTGACGTT GCCTCCGCCA TGCAGCAGAT GCTGACTGAG AGCTGTAAGA
1261ACCGGCTCAT CCAGATGGCC TACGAATCTC AGAGGCAGAA CTTGGTCCAG CAGGCCTGTT
1321CCAGCATGGC CGAAATGGAT GAACGATTCC AGCAGATTCT GTCGTGGCAG CAAATGGATC
1381AGAACAAAGC CATCAGCCAG ATCCTGCAGG AGAGCGCGAT GCAGAAGGCT GCGTTCGAGG
1441CACTCCAGGT GAAGAAAGAC CTGATGCATC GGCAGATCAG GAGCCAGATT AAGTTAATAG
1501AAACTGAGTT ATTGCAGCTG ACACAGCTGG AGTTAAAGAG GAAGTCCCTG GACACAGAGT
1561CACTCCAGGA GATGATCTCG GAGCAGCGCT GGGCCCTCAG CTCCCTGCTC CAGCAGCTGC
1621TCAAAGAGAA GCAGCAGCGA GAGGAAGAGC TCCGGGAAAT CCTGACGGAG TTAGAAGCCA
1681AAAGTGAAAC CAGGCAGGAA AATTACTGGC TGATTCAGTA TCAACGGCTT TTGAACCAGA
1741AGCCCTTGTC CTTGAAGCTG CAAGAAGAGG GGATGGAGCG CCAGCTGGTG GCCCTCCTGG
1801AGGAGCTGTC GGCTGAGCAC TACCTGCCCA TCTTTGCGCA CCACCGCCTC TCACTGGACC
1861TGCTGAGCCA AATGAGCCCA GGGGACCTGG CCAAGGTGGG CGTCTCAGAA GCTGGCCTGC
1921AGCACGAGAT CCTCCGGAGA GTCCAGGAAC TGCTGGATGC AGCCAGGATC CAGCCAGAGC
1981TGAAACCACC AATGGGTGAG GTCGTCACCC CTACGGCCCC CCAGGAGCCT CCTGAGTCTG
2041TGAGGCCATC CGCTCCCCCT GCAGAGCTGG AGGTGCAGGC CTCAGAGTGT GTCGTGTGCC
2101TGGAACGGGA GGCCCAGATG ATCTTCCTCA ACTGTGGCCA CGTCTGCTGC TGCCAGCAGT
2161GCTGCCAGCC ACTGCGCACC TGCCCGCTGT GCCGCCAGGA CATCGCCCAG CGCCTCCGCA
2221TCTACCACAG CAGCTCCCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct
2281tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.