Transcript: Mouse XM_006497967.3

PREDICTED: Mus musculus leucine rich repeat and sterile alpha motif containing 1 (Lrsam1), transcript variant X6, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Lrsam1 (227738)
Length:
4138
CDS:
358..2577

Additional Resources:

NCBI RefSeq record:
XM_006497967.3
NBCI Gene record:
Lrsam1 (227738)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006497967.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000105657 CGACATTAGTGAGAACGAGAT pLKO.1 858 CDS 100% 4.050 5.670 N Lrsam1 n/a
2 TRCN0000105656 CGCTGGAGAATGAGAGAATAA pLKO.1 1466 CDS 100% 13.200 9.240 N Lrsam1 n/a
3 TRCN0000105659 AGGCTAATAGAAACTGAGTTA pLKO.1 1819 CDS 100% 4.950 3.465 N Lrsam1 n/a
4 TRCN0000105655 CCTCAGTACATTAGTTGTCAT pLKO.1 3736 3UTR 100% 4.950 3.465 N Lrsam1 n/a
5 TRCN0000105658 GCTAATAGAAACTGAGTTACT pLKO.1 1821 CDS 100% 4.950 3.465 N Lrsam1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006497967.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_09303 pDONR223 100% 79.8% 81.5% None (many diffs) n/a
2 ccsbBroad304_09303 pLX_304 0% 79.8% 81.5% V5 (many diffs) n/a
3 TRCN0000469870 ATGCAGCGACCTAGGTCATCTGGA pLX_317 17.4% 79.8% 81.5% V5 (many diffs) n/a
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