Construct: ORF ccsbBroadEn_09307

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006097.1_s300c1, BRDN0000456019
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SPSB3 (90864)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 90864 SPSB3 splA/ryanodine receptor dom... NM_001324081.1 99.5% 99.1% (many diffs)
2 human 90864 SPSB3 splA/ryanodine receptor dom... NM_080861.4 99.5% 99.1% (many diffs)
3 human 90864 SPSB3 splA/ryanodine receptor dom... XM_005255673.5 86.1% 85.8% (many diffs)
4 mouse 79043 Spsb3 splA/ryanodine receptor dom... XM_006525170.3 77.8% 82.8% (many diffs)
5 mouse 79043 Spsb3 splA/ryanodine receptor dom... XM_011246733.2 77.8% 82.8% (many diffs)
6 mouse 79043 Spsb3 splA/ryanodine receptor dom... NM_001163751.1 76.4% 81.6% (many diffs)
7 mouse 79043 Spsb3 splA/ryanodine receptor dom... NM_027141.2 75.6% 80.7% (many diffs)
8 mouse 79043 Spsb3 splA/ryanodine receptor dom... XM_006525169.3 71.9% 76.6% (many diffs)
9 mouse 79043 Spsb3 splA/ryanodine receptor dom... XM_006525168.3 71.2% 75.9% (many diffs)
10 mouse 79043 Spsb3 splA/ryanodine receptor dom... NM_001163750.1 58.9% 62.8% (many diffs)
11 mouse 79043 Spsb3 splA/ryanodine receptor dom... XM_006525165.3 56.3% 59.8% (many diffs)
12 mouse 79043 Spsb3 splA/ryanodine receptor dom... XM_006525166.3 48.7% 46.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1134
ORF length:
1065
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGCCAGACGC CCCCGGAACA GCAGGGCCTG GCACTTCGTC CTGAGTGCAG
121CCCGCCGAGA CGCAGATGCC CGGGCCGTGG CTCTAGCAGG CTCCACTAAC TGGGGCTACG
181ACTCTGATGG GCAGCACAGC GACTCGGACT CCGACCCCGA GTACTCCACG CTGCCGCCAT
241CCATCCCCAG TGCGGTGCCC GTGACCGGCG AGTCCTTCTG TGACTGTGCT GGGCAGAGCG
301AGGCCTCCTT CTGTAGCAGC CTGCACTCGG CCCACCGGGG CAGGGACTGC CGCTGCGGAG
361AGGAAGACGA GTATTTCGAC TGGGTCTGGG ATGACTTAAA TAAGTCATCA GCCACCCTGC
421TGAGCTGTGA CAACCGTAAG GTCAGCTTCC ACATGGAGTA CAGCTGCGGC ACAGCGGCCA
481TCCGGGGCAC CAAGGAGCTG GGGGAGGGCC AGCACTTCTG GGAGATCAAG ATGACCTCTC
541CCGTCTACGG CACCGACATG ATGGTGGGCA TCGGGACGTC GGATGTGGAC CTGGACAAAT
601ACCGCCACAC GTTCTGCAGC CTGCTGGGCA GGGATGAGGA CAGCTGGGGC CTCTCCTACA
661CGGGCCTCCT CCACCACAAG GGCGACAAGA CCAGCTTCCC GTCGCGGTTC GGCCAGGGCT
721CCATCATTGG CGTGCACCTG GACACCTGGC ACGGCACACT CACCTTTTTC AAGAACAGGA
781AGTGTATAGG TGTGGCAGCC ACCAAGCTGC AGAACAAGAG ATTCTACCCG ATGGTGTGCT
841CCACGGCGGC CCGGAGCAGC ATGAAGGTCA CCAGCTCCTG TGCCAGCGCC ACTTCCCTCC
901AGTACCTGTG CTGCCACCGC CTGCGCCAGC TGCGGCCAGA CTCGGGAGAC ACGCTGGAGG
961GTCTGCCGCT GCCACCGGGC CTCAAGCAGG TGCTACACAA CAAGCTGGGC TGGGTCCTGA
1021GCATGAGTTG CAGCCGCCGC AAGGCTCCAG TGTCCGATCC CCAGGCAGCG ACCTCCGCCC
1081ACCGCAGCAG TCGCGAGCCT CGGCCCTGCC AGAGGAAGCG CTGCCGCCGG ACCTTGCCAA
1141CTTTCTTGTA CAAAGTTGGc attataagaa agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)

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