Construct: ORF ccsbBroadEn_09320

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000048.1_s300c1, BRDN0000397551
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ATPAF2 (91647)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 91647 ATPAF2 ATP synthase mitochondrial ... NM_145691.4 99.8% 100% 522C>T
2 human 91647 ATPAF2 ATP synthase mitochondrial ... XM_011524065.2 87.7% 82.5% (many diffs)
3 human 91647 ATPAF2 ATP synthase mitochondrial ... XM_005256848.4 84.2% 82.5% (many diffs)
4 human 91647 ATPAF2 ATP synthase mitochondrial ... XM_017025302.1 65.2% 63.3% 0_1ins154;23_24ins146;222C>T
5 human 91647 ATPAF2 ATP synthase mitochondrial ... XM_017025303.1 53.5% 46.9% (many diffs)
6 human 91647 ATPAF2 ATP synthase mitochondrial ... XR_001752677.2 48.2% (many diffs)
7 mouse 246782 Atpaf2 ATP synthase mitochondrial ... NM_145427.2 83.4% 84.5% (many diffs)
8 mouse 246782 Atpaf2 ATP synthase mitochondrial ... XM_011249024.2 62.6% 61.1% (many diffs)
9 mouse 246782 Atpaf2 ATP synthase mitochondrial ... XM_006533343.3 61.1% 57.6% (many diffs)
10 mouse 246782 Atpaf2 ATP synthase mitochondrial ... XM_011249025.2 57.3% 58.1% (many diffs)
11 mouse 246782 Atpaf2 ATP synthase mitochondrial ... XM_011249026.2 57.3% 58.1% (many diffs)
12 mouse 246782 Atpaf2 ATP synthase mitochondrial ... XM_006533344.3 55.7% 58.4% (many diffs)
13 mouse 246782 Atpaf2 ATP synthase mitochondrial ... XM_006533345.3 55.7% 58.4% (many diffs)
14 mouse 246782 Atpaf2 ATP synthase mitochondrial ... XM_006533346.3 55.7% 58.4% (many diffs)
15 mouse 246782 Atpaf2 ATP synthase mitochondrial ... XM_017314556.1 55.7% 58.4% (many diffs)
16 mouse 246782 Atpaf2 ATP synthase mitochondrial ... XR_001780007.1 42.3% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
933
ORF length:
867
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTG GAGGAGCTGC CTCCGGCTGC GGGACGGGGG ACGCCGTCTC CTGAATCGGC
121CGGCGGGTGG CCCCAGCGCT TCTATGAGTC CGGGGCCAAC CATCCCGTCT CCAGCCCGGG
181CTTACGCCCC GCCGACAGAA AGGAAGAGGT TTTATCAGAA TGTCAGCATC ACACAGGGTG
241AAGGTGGCTT TGAGATAAAC CTGGACCACA GGAAGCTGAA AACTCCCCAA GCCAAGCTCT
301TTACCGTCCC CAGCGAGGCC CTGGCCATTG CAGTGGCTAC TGAGTGGGAT TCCCAGCAGG
361ATACCATCAA GTACTACACC ATGCACCTGA CCACATTGTG CAACACATCA TTGGACAACC
421CAACCCAGAG AAACAAGGAT CAGCTGATCC GGGCAGCCGT GAAGTTTCTG GACACCGACA
481CCATCTGCTA CAGGGTGGAG GAGCCCGAGA CATTAGTGGA ACTTCAAAGG AATGAGTGGG
541ATCCAATCAT CGAATGGGCT GAGAAAAGAT ACGGCGTGGA GATCAGTTCC TCCACCAGCA
601TAATGGGACC CAGCATCCCT GCCAAAACTC GGGAGGTGCT CGTCAGCCAC CTGGCATCTT
661ACAACACATG GGCTTTACAA GGGATTGAGT TTGTAGCTGC CCAGCTCAAG TCCATGGTGC
721TAACCTTGGG CCTGATTGAC CTGCGCCTGA CAGTGGAGCA GGCCGTGCTG CTGTCACGCC
781TGGAGGAGGA GTACCAGATC CAGAAGTGGG GCAACATTGA GTGGGCCCAT GACTATGAGC
841TGCAGGAGCT GCGGGCCCGC ACCGCCGCCG GCACCCTCTT CATCCATCTC TGCTCCGAGA
901GCACCACAGT CAAGCACAAG CTCCTGAAGG AGTGCCCAAC TTTCTTGTAC AAAGTtggca
961ttataagaaa gcattgctta tcaatttgtt gcaacgaac

Download FASTA (ORF) (Full)