Construct: ORF ccsbBroadEn_09391

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008321.1_s300c1, BRDN0000388511
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
DTX2 (113878)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 113878 DTX2 deltex E3 ubiquitin ligase 2 NM_001102594.1 99.8% 99.8% 438C>G;504C>T;1151G>A
2 human 113878 DTX2 deltex E3 ubiquitin ligase 2 NM_001102595.1 99.8% 99.8% 438C>G;504C>T;1151G>A
3 human 113878 DTX2 deltex E3 ubiquitin ligase 2 NM_020892.2 99.8% 99.8% 438C>G;504C>T;1151G>A
4 human 113878 DTX2 deltex E3 ubiquitin ligase 2 XM_005250131.2 99.8% 99.8% 438C>G;504C>T;1151G>A
5 human 113878 DTX2 deltex E3 ubiquitin ligase 2 XM_005250132.2 99.8% 99.8% 438C>G;504C>T;1151G>A
6 human 113878 DTX2 deltex E3 ubiquitin ligase 2 XM_011515772.1 99.8% 99.8% 438C>G;504C>T;1151G>A
7 human 113878 DTX2 deltex E3 ubiquitin ligase 2 XM_011515773.2 99.8% 99.8% 438C>G;504C>T;1151G>A
8 human 113878 DTX2 deltex E3 ubiquitin ligase 2 XM_011515774.1 99.8% 99.8% 438C>G;504C>T;1151G>A
9 human 113878 DTX2 deltex E3 ubiquitin ligase 2 XM_011515775.1 99.8% 99.8% 438C>G;504C>T;1151G>A
10 human 113878 DTX2 deltex E3 ubiquitin ligase 2 XM_017011723.1 99.8% 99.8% 438C>G;504C>T;1151G>A
11 human 113878 DTX2 deltex E3 ubiquitin ligase 2 XM_017011724.1 99.8% 99.8% 438C>G;504C>T;1151G>A
12 human 113878 DTX2 deltex E3 ubiquitin ligase 2 XM_017011725.1 99.8% 99.8% 438C>G;504C>T;1151G>A
13 human 113878 DTX2 deltex E3 ubiquitin ligase 2 XM_024446649.1 99.8% 99.8% 438C>G;504C>T;1151G>A
14 human 113878 DTX2 deltex E3 ubiquitin ligase 2 NM_001102596.2 92.3% 92.4% 438C>G;504C>T;1010_1011ins141
15 human 113878 DTX2 deltex E3 ubiquitin ligase 2 XM_017011726.2 92.3% 92.4% 438C>G;504C>T;1010_1011ins141
16 human 113878 DTX2 deltex E3 ubiquitin ligase 2 XM_017011727.1 92.3% 92.4% 438C>G;504C>T;1010_1011ins141
17 human 113878 DTX2 deltex E3 ubiquitin ligase 2 XM_024446650.1 92.3% 92.4% 438C>G;504C>T;1010_1011ins141
18 human 113878 DTX2 deltex E3 ubiquitin ligase 2 XM_024446651.1 91.1% 91.1% (many diffs)
19 human 113878 DTX2 deltex E3 ubiquitin ligase 2 XM_017011729.2 66.5% 66% (many diffs)
20 human 113878 DTX2 deltex E3 ubiquitin ligase 2 XM_017011730.2 66.1% 66% (many diffs)
21 human 441263 DTX2P1-UPK3BP1-PMS2P11 DTX2P1-UPK3BP1-PMS2P11 read... NR_023383.1 38.9% (many diffs)
22 mouse 74198 Dtx2 deltex 2, E3 ubiquitin ligase NM_001256096.1 83.8% 84.9% (many diffs)
23 mouse 74198 Dtx2 deltex 2, E3 ubiquitin ligase XM_006504506.3 83.8% 84.9% (many diffs)
24 mouse 74198 Dtx2 deltex 2, E3 ubiquitin ligase XM_006504507.2 83.8% 84.9% (many diffs)
25 mouse 74198 Dtx2 deltex 2, E3 ubiquitin ligase XM_006504508.1 83.8% 84.9% (many diffs)
26 mouse 74198 Dtx2 deltex 2, E3 ubiquitin ligase NM_023742.2 83.6% 84.7% (many diffs)
27 mouse 74198 Dtx2 deltex 2, E3 ubiquitin ligase XM_006504510.3 44.4% 46% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1932
ORF length:
1866
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC CATGGCCCCA AGCCCTTCCC TGGTGCAGGT GTACACCAGC CCCGCGGCTG
121TGGCCGTGTG GGAATGGCAG GACGGGCTGG GCACCTGGCA CCCCTACAGT GCCACCGTCT
181GCAGCTTCAT CGAGCAGCAG TTTGTCCAGC AGAAGGGCCA ACGTTTTGGG CTTGGGAGCC
241TGGCCCACAG CATCCCCTTG GGCCAGGCAG ACCCCTCGCT GGCCCCTTAC ATTATTGACC
301TCCCCAGCTG GACCCAGTTC CGCCAGGACA CCGGCACCAT GCGGGCTGTG CGGAGACACC
361TGTTCCCCCA GCACTCAGCC CCTGGCCGAG GTGTCGTCTG GGAGTGGCTG AGCGACGATG
421GCTCCTGGAC TGCCTATGAA GCCAGCGTCT GTGACTATCT GGAGCAGCAG GTGGCCAGGG
481GCAACCAGCT CGTGGACTTG GCGCCCCTGG GGTACAACTA CACTGTCAAC TACACCACCC
541ACACGCAGAC CAACAAGACT TCCAGCTTTT GCCGCAGCGT GCGGCGCCAA GCAGGGCCGC
601CTTACCCGGT GACCACCATC ATCGCTCCGC CGGGCCACAC AGGCGTCGCC TGCTCTTGCC
661ACCAGTGCCT CAGTGGCAGC AGAACTGGCC CCGTGTCAGG CCGCTACCGC CACTCCATGA
721CCAACCTCCC TGCATACCCC GTCCCCCAGC ACCCCCCACA CAGGACCGCT TCTGTGTTTG
781GGACCCACCA GGCCTTTGCA CCGTACAACA AACCCTCACT CTCCGGGGCC CGGTCTGCGC
841CCAGGCTGAA CACCACCAAC GCCTGGGGCG CAGCTCCTCC TTCCCTGGGG AGCCAGCCCC
901TCTACCGCTC CAGCCTCTCC CACCTGGGAC CGCAGCACCT GCCCCCAGGA TCCTCCACCT
961CCGGTGCAGT CAGTGCCTCC CTCCCCAGCG GTCCCTCAAG CAGCCCAGGG AGCGTCCCTG
1021CCACTGTGCC CATGCAGATG CCAAAGCCCA GCAGAGTCCA GCAGGCGCTC GCAGGCATGA
1081CGAGTGTTCT GATGTCAGCC ATTGGACTCC CTGTGTGTCT TAGCCGCGCA CCCCAGCCCA
1141CCAGCCCTCC CGCCTCCCGT CTGGCTTCCA AAAGTCACGG CTCAGTTAAG AGATTGAGGA
1201AAATGTCCGT GAAAGAAGCG ACCCCGAAGC CAGAGCCAGA GCCAGAGCAG GTCATAAAAA
1261ACTACACGGA AGAGCTGAAA GTGCCCCCAG ATGAGGACTG CATCATCTGC ATGGAGAAGC
1321TGTCCACAGC GTCTGGATAC AGCGATGTGA CTGACAGCAA GGCAATCGGG TCCCTAGCTG
1381TGGGCCACCT CACCAAGTGC AGCCATGCCT TCCACCTGCT GTGCCTCCTG GCCATGTACT
1441GCAACGGCAA TAAGGATGGA AGTCTGCAGT GTCCCTCCTG CAAAACCATC TATGGAGAGA
1501AGACGGGGAC CCAGCCCCAG GGAAAGATGG AGGTATTACG GTTCCAGATG TCGCTCCCCG
1561GCCACGAGGA CTGCGGGACC ATCCTCATAG TTTACAGCAT TCCCCATGGT ATCCAGGGCC
1621CTGAGCACCC CAATCCCGGA AAGCCGTTCA CTGCCAGAGG GTTTCCCCGC CAGTGCTACC
1681TTCCAGACAA CGCCCAGGGC CGCAAGGTCC TAGAGCTCCT GAAGGTGGCC TGGAAGAGGC
1741GGCTCATCTT CACAGTGGGC ACGTCCAGCA CCACGGGTGA GACGGACACC GTGGTATGGA
1801ACGAGATCCA CCACAAGACA GAGATGGACC GCAACATTAC GGGCCACGGC TATCCCGACC
1861CCAACTACCT GCAGAACGTG CTGGCTGAGC TGGCTGCCCA GGGGGTGACC GAGGACTGCC
1921TGGAGCAGCA GTGCCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat
1981caatttgttg caacgaac

Download FASTA (ORF) (Full)