Construct: ORF ccsbBroadEn_09423

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000445.1_s300c1, BRDN0000387489
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RAB3C (115827)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 115827 RAB3C RAB3C, member RAS oncogene ... NM_138453.4 99.8% 99.5% 669C>N
2 human 115827 RAB3C RAB3C, member RAS oncogene ... NM_001317915.2 96% 96.4% (many diffs)
3 mouse 67295 Rab3c RAB3C, member RAS oncogene ... NM_023852.5 89.2% 96.9% (many diffs)
4 mouse 67295 Rab3c RAB3C, member RAS oncogene ... XM_006517741.3 85.9% 93.3% (many diffs)
5 mouse 67295 Rab3c RAB3C, member RAS oncogene ... XM_006517740.3 85.8% 93.8% (many diffs)
6 mouse 67295 Rab3c RAB3C, member RAS oncogene ... XM_006517742.3 67.1% 71.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
747
ORF length:
681
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAG ACACGAAGCG CCCATGCAGA TGGCCTCTGC CCAAGATGCC AGGTACGGCC
121AGAAAGACTC CTCTGATCAG AACTTTGACT ACATGTTCAA ATTACTCATC ATCGGCAATA
181GCAGTGTGGG GAAAACATCT TTTCTATTCC GTTATGCAGA TGACTCCTTT ACATCTGCAT
241TCGTCAGCAC AGTTGGGATC GATTTCAAAG TAAAAACTGT ATTCAAAAAT GAAAAGAGAA
301TCAAGCTTCA GATTTGGGAC ACAGCAGGCC AGGAAAGATA CAGGACTATC ACCACAGCCT
361ATTATCGTGG AGCCATGGGC TTTATTTTAA TGTATGACAT TACAAATGAA GAATCCTTCA
421ATGCAGTACA AGATTGGTCA ACTCAAATCA AAACATACTC TTGGGACAAT GCCCAAGTTA
481TTCTGGTTGG GAACAAGTGT GACATGGAAG ACGAGCGGGT CATCTCAACT GAGCGAGGTC
541AACATTTAGG AGAACAGCTT GGGTTTGAGT TTTTTGAAAC AAGTGCCAAG GACAACATTA
601ATGTCAAGCA GACATTTGAG CGCCTTGTGG ATATCATCTG CGACAAAATG TCAGAGAGTT
661TGGAGACTGA TCCTGCCATC ACTGCTGCAA AGCAGAACAC GAGACTCAAG GAAACTCCTC
721CTCCACCGCA GCCNAACTGT GCCTGCTACC CAACTTTCTT GTACAAAGTt ggcattataa
781gaaagcattg cttatcaatt tgttgcaacg aac

Download FASTA (ORF) (Full)