Construct: ORF ccsbBroadEn_09436
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001668.1_s300c1, BRDN0000390404
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SNAP47 (116841)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 116841 | SNAP47 | synaptosome associated prot... | NM_053052.3 | 99.9% | 99.7% | 1141C>T |
| 2 | human | 116841 | SNAP47 | synaptosome associated prot... | XM_017000231.2 | 99.9% | 99.7% | 1141C>T |
| 3 | human | 116841 | SNAP47 | synaptosome associated prot... | XM_017000232.1 | 99.9% | 99.7% | 1141C>T |
| 4 | human | 116841 | SNAP47 | synaptosome associated prot... | XM_006711734.3 | 93.5% | 93.3% | 0_1ins88;2delT;1054C>T |
| 5 | human | 116841 | SNAP47 | synaptosome associated prot... | NM_001323935.1 | 92% | 89.4% | (many diffs) |
| 6 | human | 116841 | SNAP47 | synaptosome associated prot... | NM_001323930.1 | 90.2% | 90% | 0_1ins135;1006C>T |
| 7 | human | 116841 | SNAP47 | synaptosome associated prot... | NM_001323931.1 | 90.2% | 90% | 0_1ins135;1006C>T |
| 8 | human | 116841 | SNAP47 | synaptosome associated prot... | NM_001323932.1 | 90.2% | 90% | 0_1ins135;1006C>T |
| 9 | human | 116841 | SNAP47 | synaptosome associated prot... | NM_001323933.1 | 90.2% | 90% | 0_1ins135;1006C>T |
| 10 | human | 116841 | SNAP47 | synaptosome associated prot... | NM_001323934.1 | 90.2% | 90% | 0_1ins135;1006C>T |
| 11 | human | 116841 | SNAP47 | synaptosome associated prot... | NR_136655.1 | 56% | (many diffs) | |
| 12 | human | 116841 | SNAP47 | synaptosome associated prot... | NR_136656.1 | 52.2% | (many diffs) | |
| 13 | human | 116841 | SNAP47 | synaptosome associated prot... | NR_136654.1 | 47.8% | (many diffs) | |
| 14 | human | 116841 | SNAP47 | synaptosome associated prot... | NR_136657.2 | 31.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1458
- ORF length:
- 1392
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCG CGCGGCTCGC CGCGGTCTTC ACTGCGCAGG CGCCGAGCGG CCGAGGCGCC 121 GCGGTCGGCT CTGGGACTCG TCTGGCGTCC CTCAGAGGCA GAAGAGGCCT GGACCTTGGC 181 GCACACAGAC CCAGGAACAG ATGAGCAGGG ATGTCTGCAT CCACACCTGG CCGTGCACCT 241 ACTACCTGGA GCCCAAGAGG CGATGGGTTA CTGGACAGCT GTCCTTAACA TCGCTGTCGC 301 TCAGGTTCAT GACTGACAGC ACTGGAGAGA TTCTGGTCAG CTTCCCCCTC TCCAGCATAG 361 TTGAGATCAA GAAGGAGGCT TCACATTTTA TCTTCAGCTC CATCACCATC CTGGAGAAGG 421 GCCATGCCAA GCACTGGTTC AGCTCCCTGC GGCCAAGTCG AAATGTGGTC TTCAGCATCA 481 TCGAGCATTT CTGGAGGGAG CTGCTGCTGT CTCAGCCTGG AGCCGTGGCA GACGCATCTG 541 TCCCAAGGAC CCGGGGCGAG GAGCTGACGG GACTCATGGC TGGATCCCAG AAACGCCTGG 601 AGGACACGGC GAGGGTCCTG CACCACCAGG GCCAGCAGCT GGACAGCGTC ATGAGAGGCC 661 TGGACAAGAT GGAGTCAGAC CTGGAGGTGG CGGACAGATT GCTGACAGAA CTGGAATCTC 721 CTGCTTGGTG GCCCTTTAGC TCCAAGCTTT GGAAGACACC ACCGGAAACA AAGCCCAGGG 781 AAGATGTCTC CATGACCAGT TGTGAACCCT TTGGGAAAGA AGGGATACTG ATAAAAATTC 841 CTGCTGTTAT TTCCCACAGA ACAGAGTCTC ACGTTAAACC AGGGAGGCTC ACCGTCCTTG 901 TGTCTGGGTT GGAAATACAT GACTCCAGTT CTTTGCTCAT GCACAGGTTT GAAAGAGAAG 961 ACGTGGACGA CATCAAGGTC CACTCACCTT ACGAAATTAG CATCCGCCAG CGGTTTATTG 1021 GAAAGCCAGA CATGGCCTAT CGTTTGATAT CTGCCAAGAT GCCAGAGGTT ATCCCCATTT 1081 TAGAAGTGCA GTTCAGCAAG AAGATGGAGC TGTTAGAAGA TGCATTGGTG CTCAGAAGCG 1141 CAAGAACCTC TTCCCCCGCA GAGAAGAGCT GCTCAGTCTG GCATGCAGCA TCTGGGCTGA 1201 TGGGCTGTAC CCTGCACCGT GAGCCACCCG CAGGAGACCA GGAGGGCACA GCACTGCACC 1261 TGCAGACAAG CCTGCCAGCC CTTTCTGAGG CAGATACCCA GGAACTAACC CAGATCCTGA 1321 GGAGGATGAA GGGGCTGGCC CTGGAGGCCG AGAGTGAGCT GGAGAGACAA GACGAAGCCC 1381 TGGATGGCGT TGCAGCAGCT GTGGACAGGG CAACCTTGAC CATCGACAAG CACAACAGGC 1441 GGATGAAGAG GCTGACCTAC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt 1501 gcttatcaat ttgttgcaac gaac