Construct: ORF ccsbBroadEn_09436

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001668.1_s300c1, BRDN0000390404
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SNAP47 (116841)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 116841 SNAP47 synaptosome associated prot... NM_053052.3 99.9% 99.7% 1141C>T
2 human 116841 SNAP47 synaptosome associated prot... XM_017000231.2 99.9% 99.7% 1141C>T
3 human 116841 SNAP47 synaptosome associated prot... XM_017000232.1 99.9% 99.7% 1141C>T
4 human 116841 SNAP47 synaptosome associated prot... XM_006711734.3 93.5% 93.3% 0_1ins88;2delT;1054C>T
5 human 116841 SNAP47 synaptosome associated prot... NM_001323935.1 92% 89.4% (many diffs)
6 human 116841 SNAP47 synaptosome associated prot... NM_001323930.1 90.2% 90% 0_1ins135;1006C>T
7 human 116841 SNAP47 synaptosome associated prot... NM_001323931.1 90.2% 90% 0_1ins135;1006C>T
8 human 116841 SNAP47 synaptosome associated prot... NM_001323932.1 90.2% 90% 0_1ins135;1006C>T
9 human 116841 SNAP47 synaptosome associated prot... NM_001323933.1 90.2% 90% 0_1ins135;1006C>T
10 human 116841 SNAP47 synaptosome associated prot... NM_001323934.1 90.2% 90% 0_1ins135;1006C>T
11 human 116841 SNAP47 synaptosome associated prot... NR_136655.1 56% (many diffs)
12 human 116841 SNAP47 synaptosome associated prot... NR_136656.1 52.2% (many diffs)
13 human 116841 SNAP47 synaptosome associated prot... NR_136654.1 47.8% (many diffs)
14 human 116841 SNAP47 synaptosome associated prot... NR_136657.2 31.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1458
ORF length:
1392
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGCG CGCGGCTCGC CGCGGTCTTC ACTGCGCAGG CGCCGAGCGG CCGAGGCGCC
121GCGGTCGGCT CTGGGACTCG TCTGGCGTCC CTCAGAGGCA GAAGAGGCCT GGACCTTGGC
181GCACACAGAC CCAGGAACAG ATGAGCAGGG ATGTCTGCAT CCACACCTGG CCGTGCACCT
241ACTACCTGGA GCCCAAGAGG CGATGGGTTA CTGGACAGCT GTCCTTAACA TCGCTGTCGC
301TCAGGTTCAT GACTGACAGC ACTGGAGAGA TTCTGGTCAG CTTCCCCCTC TCCAGCATAG
361TTGAGATCAA GAAGGAGGCT TCACATTTTA TCTTCAGCTC CATCACCATC CTGGAGAAGG
421GCCATGCCAA GCACTGGTTC AGCTCCCTGC GGCCAAGTCG AAATGTGGTC TTCAGCATCA
481TCGAGCATTT CTGGAGGGAG CTGCTGCTGT CTCAGCCTGG AGCCGTGGCA GACGCATCTG
541TCCCAAGGAC CCGGGGCGAG GAGCTGACGG GACTCATGGC TGGATCCCAG AAACGCCTGG
601AGGACACGGC GAGGGTCCTG CACCACCAGG GCCAGCAGCT GGACAGCGTC ATGAGAGGCC
661TGGACAAGAT GGAGTCAGAC CTGGAGGTGG CGGACAGATT GCTGACAGAA CTGGAATCTC
721CTGCTTGGTG GCCCTTTAGC TCCAAGCTTT GGAAGACACC ACCGGAAACA AAGCCCAGGG
781AAGATGTCTC CATGACCAGT TGTGAACCCT TTGGGAAAGA AGGGATACTG ATAAAAATTC
841CTGCTGTTAT TTCCCACAGA ACAGAGTCTC ACGTTAAACC AGGGAGGCTC ACCGTCCTTG
901TGTCTGGGTT GGAAATACAT GACTCCAGTT CTTTGCTCAT GCACAGGTTT GAAAGAGAAG
961ACGTGGACGA CATCAAGGTC CACTCACCTT ACGAAATTAG CATCCGCCAG CGGTTTATTG
1021GAAAGCCAGA CATGGCCTAT CGTTTGATAT CTGCCAAGAT GCCAGAGGTT ATCCCCATTT
1081TAGAAGTGCA GTTCAGCAAG AAGATGGAGC TGTTAGAAGA TGCATTGGTG CTCAGAAGCG
1141CAAGAACCTC TTCCCCCGCA GAGAAGAGCT GCTCAGTCTG GCATGCAGCA TCTGGGCTGA
1201TGGGCTGTAC CCTGCACCGT GAGCCACCCG CAGGAGACCA GGAGGGCACA GCACTGCACC
1261TGCAGACAAG CCTGCCAGCC CTTTCTGAGG CAGATACCCA GGAACTAACC CAGATCCTGA
1321GGAGGATGAA GGGGCTGGCC CTGGAGGCCG AGAGTGAGCT GGAGAGACAA GACGAAGCCC
1381TGGATGGCGT TGCAGCAGCT GTGGACAGGG CAACCTTGAC CATCGACAAG CACAACAGGC
1441GGATGAAGAG GCTGACCTAC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt
1501gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)