Construct: ORF ccsbBroadEn_09463
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006126.1_s300c1, BRDN0000395244
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CPXM2 (119587)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 119587 | CPXM2 | carboxypeptidase X, M14 fam... | NM_198148.3 | 99.8% | 99.8% | 1575C>T;1632C>T;2249A>G |
| 2 | human | 119587 | CPXM2 | carboxypeptidase X, M14 fam... | XM_005269528.3 | 91.6% | 89.5% | (many diffs) |
| 3 | human | 119587 | CPXM2 | carboxypeptidase X, M14 fam... | XM_011539283.2 | 90.8% | 87.7% | (many diffs) |
| 4 | human | 119587 | CPXM2 | carboxypeptidase X, M14 fam... | XM_011539285.2 | 85.4% | 85.4% | (many diffs) |
| 5 | human | 119587 | CPXM2 | carboxypeptidase X, M14 fam... | XM_017015673.1 | 85.4% | 85.4% | (many diffs) |
| 6 | human | 119587 | CPXM2 | carboxypeptidase X, M14 fam... | XM_011539286.1 | 69.8% | 69.8% | (many diffs) |
| 7 | human | 119587 | CPXM2 | carboxypeptidase X, M14 fam... | XM_017015674.1 | 56.6% | 56.6% | (many diffs) |
| 8 | mouse | 55987 | Cpxm2 | carboxypeptidase X 2 (M14 f... | NM_018867.5 | 84.8% | 88.6% | (many diffs) |
| 9 | mouse | 55987 | Cpxm2 | carboxypeptidase X 2 (M14 f... | XM_006508033.3 | 78.1% | 81.1% | (many diffs) |
| 10 | mouse | 55987 | Cpxm2 | carboxypeptidase X 2 (M14 f... | XM_006508034.3 | 75.7% | 78.5% | (many diffs) |
| 11 | mouse | 55987 | Cpxm2 | carboxypeptidase X 2 (M14 f... | XM_011241864.1 | 64.7% | 67.7% | (many diffs) |
| 12 | mouse | 55987 | Cpxm2 | carboxypeptidase X 2 (M14 f... | XM_006508036.2 | 61.3% | 66.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2337
- ORF length:
- 2268
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GTCCCGCCCG GGGACCGCTA CCCCAGCGCT GGCCCTGGTG CTCCTGGCAG 121 TGACCCTGGC CGGGGTCGGA GCCCAGGGCG CAGCCCTCGA GGACCCTGAT TATTACGGGC 181 AGGAGATCTG GAGCCGGGAG CCCTACTACG CGCGCCCGGA GCCCGAGCTC GAGACCTTCT 241 CTCCGCCGCT GCCTGCGGGG CCCGGGGAGG AGTGGGAGCG GCGCCCGCAG GAGCCCAGGC 301 CGCCCAAGAG GGCCACCAAG CCCAAGAAAG CTCCCAAGAG GGAGAAGTCG GCTCCGGAGC 361 CGCCTCCACC AGGTAAACAC AGCAACAAAA AAGTTATGAG AACCAAGAGC TCTGAGAAGG 421 CTGCCAACGA TGATCACAGT GTCCGTGTGG CCCGTGAAGA TGTCAGAGAG AGTTGCCCAC 481 CTCTTGGTCT GGAAACCTTA AAAATCACAG ACTTCCAGCT CCATGCCTCC ACGGTGAAGC 541 GCTATGGCCT GGGGGCACAT CGAGGGAGAC TCAACATCCA GGCGGGCATT AATGAAAATG 601 ATTTTTATGA CGGAGCGTGG TGCGCGGGAA GAAATGACCT CCAGCAGTGG ATTGAAGTGG 661 ATGCTCGGCG CCTGACCAGA TTCACTGGTG TCATCACTCA AGGGAGGAAC TCCCTCTGGC 721 TGAGTGACTG GGTGACATCC TATAAGGTCA TGGTGAGCAA TGACAGCCAC ACGTGGGTCA 781 CTGTTAAGAA TGGATCTGGA GACATGATAT TTGAGGGAAA CAGTGAGAAG GAGATCCCTG 841 TTCTCAATGA GCTACCCGTC CCCATGGTGG CCCGCTACAT CCGCATAAAC CCTCAGTCCT 901 GGTTTGATAA TGGGAGCATC TGCATGAGAA TGGAGATCCT GGGCTGCCCA CTGCCAGATC 961 CTAATAATTA TTATCACCGC CGGAACGAGA TGACCACCAC TGATGACCTG GATTTTAAGC 1021 ACCACAATTA TAAGGAAATG CGCCAGTTGA TGAAAGTTGT GAATGAAATG TGTCCCAATA 1081 TCACCAGAAT TTACAACATT GGAAAAAGCC ACCAGGGCCT GAAGCTGTAT GCTGTGGAGA 1141 TCTCAGATCA CCCTGGGGAG CATGAAGTCG GTGAGCCCGA GTTCCACTAC ATCGCGGGGG 1201 CCCACGGCAA TGAGGTGCTG GGCCGGGAGC TGCTGCTGCT GCTGGTGCAG TTCGTGTGTC 1261 AGGAGTACTT GGCCCGGAAT GCGCGCATCG TCCACCTGGT GGAGGAGACG CGGATTCACG 1321 TCCTCCCCTC CCTCAACCCC GATGGCTACG AGAAGGCCTA CGAAGGGGGC TCGGAGCTGG 1381 GAGGCTGGTC CCTGGGACGC TGGACCCACG ATGGAATTGA CATCAACAAC AACTTTCCTG 1441 ATTTAAACAC GCTGCTCTGG GAGGCAGAGG ATCGACAGAA TGTCCCCAGG AAAGTTCCCA 1501 ATCACTATAT TGCAATCCCT GAGTGGTTTC TGTCGGAAAA TGCCACGGTG GCTGCCGAGA 1561 CCAGAGCAGT CATAGCCTGG ATGGAAAAAA TCCCTTTTGT GCTGGGCGGC AACCTGCAGG 1621 GCGGCGAGCT GGTGGTGGCG TATCCCTACG ACCTGGTGCG GTCCCCCTGG AAGACGCAGG 1681 AACACACCCC CACCCCCGAT GACCACGTGT TCCGCTGGCT GGCCTACTCC TATGCCTCCA 1741 CACACCGCCT CATGACAGAC GCCCGGAGGA GGGTGTGCCA CACGGAGGAC TTCCAGAAGG 1801 AGGAGGGCAC TGTCAATGGG GCCTCCTGGC ACACCGTCGC TGGAAGTCTG AACGATTTCA 1861 GCTACCTTCA TACAAACTGC TTCGAACTGT CCATCTACGT GGGCTGTGAT AAATACCCAC 1921 ATGAGAGCCA GCTGCCCGAG GAGTGGGAGA ATAACCGGGA ATCTCTGATC GTGTTCATGG 1981 AGCAGGTTCA TCGTGGCATT AAAGGCTTGG TGAGAGATTC ACATGGAAAA GGAATCCCAA 2041 ACGCCATTAT CTCCGTAGAA GGCATTAACC ATGACATCCG AACAGCCAAC GATGGGGATT 2101 ACTGGCGCCT CCTGAACCCT GGAGAGTATG TGGTCACAGC AAAGGCCGAA GGTTTCACTG 2161 CATCCACCAA GAACTGTATG GTTGGCTATG ACATGGGGGC CACAAGGTGT GACTTCACAC 2221 TTAGCAAAAC CAACATGGCC AGGATCCGAG AGATCATGGA GAAGTTTGGG AAGCAGCCCG 2281 TCAGCCTGCC AGCCAGGCGG CTGAAGCTGC GGGGGCGGAA GAGACGACAG CGTGGGTTGC 2341 CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg 2401 aac