Construct: ORF ccsbBroadEn_09487

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001962.1_s300c1, BRDN0000398232
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
B4GALNT2 (124872)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 124872 B4GALNT2 beta-1,4-N-acetyl-galactosa... NM_153446.3 99.7% 99.8% (many diffs)
2 human 124872 B4GALNT2 beta-1,4-N-acetyl-galactosa... NM_001159387.2 88.8% 88.6% (many diffs)
3 human 124872 B4GALNT2 beta-1,4-N-acetyl-galactosa... NM_001159388.1 84.6% 84.8% 0_1ins258;318C>T;843T>C
4 human 124872 B4GALNT2 beta-1,4-N-acetyl-galactosa... XM_017024173.1 84.6% 84.8% 0_1ins258;318C>T;843T>C
5 human 124872 B4GALNT2 beta-1,4-N-acetyl-galactosa... XM_011524314.2 56.1% 55.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1767
ORF length:
1698
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGGGAGCGCT GGCTTTTCCG TGGGAAAATT CCACGTGGAG GTGGCCTCTC
121GCGGCCGGGA ATGTGTCTCG GGGACGCCCG AGTGTGGGAA TCGGCTCGGG AGTGCGGGCT
181TCGGGGATCT CTGCTTGGAA CTCAGAGGCG CTGACCCAGC CTGGGGCCCG TTTGCTGCCC
241ACGGGAGGAG CCGCCGTCAG GGCTCGAGAT TTCTGTGGCT CCTCAAGATA TTGGTCATAA
301TCCTGGTACT TGGCATTGTT GGATTTATGT TCGGAAGCAT GTTCCTTCAA GCAGTGTTCA
361GCAGCCCCAA GCCAGAACTC CCAAGTCCTG CCCCGGGTGT CCAGAAGCTG AAGCTTCTGC
421CTGAGGAACG TCTCAGGAAC CTCTTTTCCT ACGATGGAAT CTGGCTGTTC CCGAAAAATC
481AGTGCAAATG TGAAGCCAAC AAAGAGCAGG GAGGTTACAA CTTTCAGGAT GCCTATGGCC
541AGAGCGACCT CCCAGCGGTG AAAGCGAGGA GACAGGCTGA ATTTGAACAC TTTCAGAGGA
601GAGAAGGGCT GCCCCGCCCA CTGCCCCTGC TGGTCCAGCC CAATCTCCCC TTTGGGTACC
661CAGTCCACGG AGTGGAGGTG ATGCCCCTGC ACACGGTTCC CATCCCAGGC CTCCAGTTTG
721AAGGACCCGA TGCCCCCGTC TATGAGGTCA CCCTGACAGC TTCTCTGGGG ACACTGAACA
781CCCTTGCTGA TGTCCCAGAC AGTGTGGTGC AGGGCAGAGG CCAGAAGCAG CTGATCATTT
841CTACCAGTGA CCGGAAGCTG TTGAAGTTCA TTCTTCAGCA CGTGACATAC ACCAGCACGG
901GGTACCAGCA CCAGAAGGTA GACATAGTGA GTCTGGAGTC CAGGTCCTCA GTGGCCAAGT
961TTCCAGTGAC CATCCGCCAT CCTGTCATAC CCAAGCTATA CGACCCTGGA CCAGAGAGGA
1021AGCTCAGAAA CCTGGTTACC ATTGCTACCA AGACTTTCCT CCGCCCCCAC AAGCTCATGA
1081TCATGCTCCG GAGTATTCGA GAGTATTACC CAGACTTGAC CGTAATAGTG GCTGATGACA
1141GCCAGAAGCC CCTGGAAATT AAAGACAACC ACGTGGAGTA TTACACTATG CCCTTTGGGA
1201AGGGTTGGTT TGCTGGTAGG AACCTGGCCA TATCTCAGGT CACCACCAAA TACGTTCTCT
1261GGGTGGACGA TGATTTTCTC TTCAACGAGG AGACCAAGAT TGAGGTGCTG GTGGATGTCC
1321TGGAGAAAAC AGAACTGGAC GTGGTAGGCG GCAGTGTGCT GGGAAATGTG TTCCAGTTTA
1381AGTTGTTGCT GGAACAGAGT GAGAATGGGG CCTGCCTTCA CAAGAGGATG GGATTTTTCC
1441AACCCCTGGA TGGCTTCCCC AGCTGCGTGG TGACCAGTGG CGTGGTCAAC TTCTTCCTGG
1501CCCACACGGA GCGACTCCAA AGAGTTGGCT TTGATCCCCG CCTGCAACGA GTGGCTCACT
1561CAGAATTCTT CATTGATGGG CTAGGGACCC TACTCGTGGG GTCATGCCCA GAAGTGATTA
1621TAGGTCACCA GTCTCGGTCT CCAGTGGTGG ACTCAGAACT GGCTGCCCTA GAGAAGACCT
1681ACAATACATA CCGGTCCAAC ACCCTCACCC GGGTCCAGTT CAAGCTGGCC CTCCACTACT
1741TCAAGAACCA TCTCCAATGT GCCGCATTGC CAACTTTCTT GTACAAAGTt ggcattataa
1801gaaagcattg cttatcaatt tgttgcaacg aac

Download FASTA (ORF) (Full)