Construct: ORF ccsbBroadEn_09548

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006597.1_s300c1, BRDN0000457397
DNA Barcode:
None
Epitope Tag:
None
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
PPARGC1B (133522)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 133522 PPARGC1B PPARG coactivator 1 beta NM_133263.4 99.9% .4% 2_3insG
2 human 133522 PPARGC1B PPARG coactivator 1 beta XM_005268372.4 97.4% .4% (many diffs)
3 human 133522 PPARGC1B PPARG coactivator 1 beta NM_001172698.2 96.1% .5% 2_3insG;464_465ins117
4 human 133522 PPARGC1B PPARG coactivator 1 beta XM_011537553.2 95% .4% (many diffs)
5 human 133522 PPARGC1B PPARG coactivator 1 beta NM_001172699.1 93.6% .5% 0_1ins77;2delT;389_390ins117
6 human 133522 PPARGC1B PPARG coactivator 1 beta XM_011537554.2 92.5% .4% (many diffs)
7 human 133522 PPARGC1B PPARG coactivator 1 beta XM_011537555.2 91.3% .4% (many diffs)
8 human 133522 PPARGC1B PPARG coactivator 1 beta XM_011537556.2 80% .6% 0_1ins613
9 human 133522 PPARGC1B PPARG coactivator 1 beta XM_011537557.1 56.7% 1.2% 2_3insG;1703_1704ins37;1743_1744ins1289
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
138
ORF length:
69
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGGCGGGGAA CGACTGCGGC GCGCTGCTGG ACGAAGAGCT CTCCTCCTTC
121TTCCTCAACT ATCTCGCTGA CACGCAGGGT GGAGGGTCCG GGGAGGAGCA ACTCTATGCT
181GACTTTCCAG AACTTGACCT CTCCCAGCTG GATGCCAGCG ACTTTGACTC GGCCACCTGC
241TTTGGGGAGC TGCAGTGGTG CCCAGAGAAC TCAGAGACTG AACCCAACCA GTACAGCCCC
301GATGACTCCG AGCTCTTCCA GATTGACAGT GAGAATGAGG CCCTCCTGGC AGAGCTCACC
361AAGACCCTGG ATGACATCCC TGAAGATGAC GTGGGTCTGG CTGCCTTCCC AGCCCTGGAT
421GGTGGAGACG CTCTATCATG CACCTCAGCT TCGCCTGCCC CCTCATCTGC ACCCCCCAGC
481CCTGCCCCGG AGAAGCCCTC GGCCCCAGCC CCTGAGGTGG ACGAGCTCTC ACTGCTGCAG
541AAGCTCCTCC TGGCCACATC CTACCCAACA TCAAGCTCTG ACACCCAGAA GGAAGGGACC
601GCCTGGCGCC AGGCAGGCCT CAGATCTAAA AGTCAACGGC CTTGTGTTAA GGCGGACAGC
661ACCCAAGACA AGAAGGCTCC CATGATGCAG TCTCAGAGCC GAAGTTGTAC AGAACTACAT
721AAGCACCTCA CCTCGGCACA GTGCTGCCTG CAGGATCGGG GTCTGCAGCC ACCATGCCTC
781CAGAGTCCCC GGCTCCCTGC CAAGGAGGAC AAGGAGCCGG GTGAGGACTG CCCGAGCCCC
841CAGCCAGCTC CAGCCTCTCC CCGGGACTCC CTAGCTCTGG GCAGGGCAGA CCCCGGTGCC
901CCGGTTTCCC AGGAAGACAT GCAGGCGATG GTGCAACTCA TACGCTACAT GCACACCTAC
961TGCCTCCCCC AGAGGAAGCT GCCCCCACAG ACCCCTGAGC CACTCCCCAA GGCCTGCAGC
1021AACCCCTCCC AGCAGGTCAG ATCCCGGCCC TGGTCCCGGC ACCACTCCAA AGCCTCCTGG
1081GCTGAGTTCT CCATTCTGAG GGAACTTCTG GCTCAAGACG TGCTCTGTGA TGTCAGCAAA
1141CCCTACCGTC TGGCCACGCC TGTTTATGCC TCCCTCACAC CTCGGTCAAG GCCCAGGCCC
1201CCCAAAGACA GTCAGGCCTC CCCTGGTCGC CCGTCCTCGG TGGAGGAGGT AAGGATCGCA
1261GCTTCACCCA AGAGCACCGG GCCCAGACCA AGCCTGCGCC CACTGCGGCT GGAGGTGAAA
1321AGGGAGGTCC GCCGGCCTGC CAGACTGCAG CAGCAGGAGG AGGAAGACGA GGAAGAAGAG
1381GAGGAGGAAG AGGAAGAAGA AAAAGAGGAG GAGGAGGAGT GGGGCAGGAA AAGGCCAGGC
1441CGAGGCCTGC CATGGACGAA GCTGGGGAGG AAGCTGGAGA GCTCTGTGTG CCCCGTGCGG
1501CGTTCTCGGA GACTGAACCC TGAGCTGGGC CCCTGGCTGA CATTTGCAGA TGAGCCGCTG
1561GTCCCCTCGG AGCCCCAAGG TGCTCTGCCC TCACTGTGCC TGGCTCCCAA GGCCTACGAC
1621GTAGAGCGGG AGCTGGGCAG CCCCACGGAC GAGGACAGTG GCCAAGACCA GCAGCTCCTA
1681CGGGGACCCC AGATCCCTGC CCTGGAGAGC CCCTGTGAGA GTGGGTGTGG GGACATGGAT
1741GAGGACCCCA GCTGCCCGCA GCTCCCTCCC AGAGACTCTC CCAGGTGCCT CATGCTGGCC
1801TTGTCACAAA GCGACCCAAC TTTTGGCAAG AAGAGCTTTG AGCAGACCTT GACAGTGGAG
1861CTCTGTGGCA CAGCAGGACT CACCCCACCC ACCACACCAC CGTACAAGCC CACAGAGGAG
1921GATCCCTTCA AACCAGACAT CAAGCATAGT CTAGGCAAAG AAATAGCTCT CAGCCTCCCC
1981TCCCCTGAGG GCCTCTCACT CAAGGCCACC CCAGGGGCTG CCCACAAGCT GCCAAAGAAG
2041CACCCAGAGC GAAGTGAGCT CCTGTCCCAC CTGCGACATG CCACAGCCCA GCCAGCCTCC
2101CAGGCTGGCC AGAAGCGTCC CTTCTCCTGT TCCTTTGGAG ACCATGACTA CTGCCAGGTG
2161CTCCGACCAG AAGGCGTCCT GCAAAGGAAG GTGCTGAGGT CCTGGGAGCC GTCTGGGGTT
2221CACCTTGAGG ACTGGCCCCA GCAGGGTGCC CCTTGGGCTG AGGCACAGGC CCCTGGCAGG
2281GAGGAAGACA GAAGCTGTGA TGCTGGCGCC CCACCCAAGG ACAGCACGCT GCTGAGAGAC
2341CATGAGATCC GTGCCAGCCT CACCAAACAC TTTGGGCTGC TGGAGACCGC CCTGGAGGAG
2401GAAGACCTGG CCTCCTGCAA GAGCCCTGAG TATGACACTG TCTTTGAAGA CAGCAGCAGC
2461AGCAGCGGCG AGAGCAGCTT CCTCCCAGAG GAGGAAGAGG AAGAAGGGGA GGAGGAGGAG
2521GAGGACGATG AAGAAGAGGA CTCAGGGGTC AGCCCCACTT GCTCTGACCA CTGCCCCTAC
2581CAGAGCCCAC CAAGCAAGGC CAACCGGCAG CTCTGTTCCC GCAGCCGCTC AAGCTCTGGC
2641TCTTCACCCT GCCACTCCTG GTCACCAGCC ACTCGAAGGA ACTTCAGATG TGAGAGCAGA
2701GGGCCGTGTT CAGACAGAAC GCCAAGCATC CGGCACGCCA GGAAGCGGCG GGAAAAGGCC
2761ATTGGGGAAG GCCGCGTGGT GTACATTCAA AATCTCTCCA GCGACATGAG CTCCCGAGAG
2821CTGAAGAGGC GCTTTGAAGT GTTTGGTGAG ATTGAGGAGT GCGAGGTGCT GACAAGAAAT
2881AGGAGAGGCG AGAAGTACGG CTTCATCACC TACCGGTGTT CTGAGCACGC GGCCCTCTCT
2941TTGACAAAGG GCGCTGCCCT GAGGAAGCGC AACGAGCCCT CCTTCCAGCT GAGCTACGGA
3001GGGCTCCGGC ACTTCTGCTG GCCCAGATAC ACTGACTACG ATTCCAATTC AGAAGAGGCC
3061CTTCCTGCGT CAGGGAAAAG CAAGTATGAA GCCATGGATT TTGACAGCTT ACTGAAAGAG
3121GCCCAGCAGA GCCTGCATTT GCCAACTTTC TTGTACAAAG TTGGcattat aagaaagcat
3181tgcttatcaa tttgttgcaa cgaac

Download FASTA (ORF) (Full)

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