Construct: ORF ccsbBroadEn_09576
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017615.1_s300c1, BRDN0000389888
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLITRK4 (139065)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 139065 | SLITRK4 | SLIT and NTRK like family m... | NM_001184749.3 | 99.8% | 100% | (many diffs) |
| 2 | human | 139065 | SLITRK4 | SLIT and NTRK like family m... | NM_001184750.2 | 99.8% | 100% | (many diffs) |
| 3 | human | 139065 | SLITRK4 | SLIT and NTRK like family m... | NM_173078.5 | 99.8% | 100% | (many diffs) |
| 4 | human | 139065 | SLITRK4 | SLIT and NTRK like family m... | XM_005262365.4 | 99.8% | 100% | (many diffs) |
| 5 | human | 139065 | SLITRK4 | SLIT and NTRK like family m... | XM_011531265.2 | 99.8% | 100% | (many diffs) |
| 6 | mouse | 245446 | Slitrk4 | SLIT and NTRK-like family, ... | NM_178740.4 | 90.8% | 97.2% | (many diffs) |
| 7 | mouse | 245446 | Slitrk4 | SLIT and NTRK-like family, ... | XM_006528011.1 | 90.8% | 97.2% | (many diffs) |
| 8 | mouse | 245446 | Slitrk4 | SLIT and NTRK-like family, ... | XM_006528013.3 | 90.8% | 97.2% | (many diffs) |
| 9 | mouse | 245446 | Slitrk4 | SLIT and NTRK-like family, ... | XM_017318485.1 | 90.8% | 97.2% | (many diffs) |
| 10 | mouse | 245446 | Slitrk4 | SLIT and NTRK-like family, ... | XM_017318486.1 | 90.8% | 97.2% | (many diffs) |
| 11 | mouse | 245446 | Slitrk4 | SLIT and NTRK-like family, ... | XM_017318487.1 | 90.8% | 97.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2577
- ORF length:
- 2511
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTT TCTGTGGCTG TTTCTGATTT TGTCAGCCCT GATTTCTTCG ACAAATGCAG 121 ATTCTGACAT ATCGGTGGAA ATTTGCAATG TGTGTTCCTG CGTGTCAGTT GAGAATGTGC 181 TCTATGTCAA CTGTGAGAAG GTTTCAGTCT ACAGACCAAA TCAGCTGAAA CCACCTTGGT 241 CTAATTTTTA TCACCTCAAT TTCCAAAATA ATTTTTTAAA TATTCTGTAT CCAAATACAT 301 TCTTGAATTT TTCACATGCA GTCTCCCTGC ATCTGGGGAA TAATAAACTG CAGAACATTG 361 AGGGAGGAGC CTTTCTTGGG CTCAGTGCAT TAAAGCAGTT GCACTTGAAC AACAATGAAT 421 TAAAGATTCT CCGAGCTGAC ACTTTCCTTG GCATAGAGAA CTTGGAGTAT CTCCAGGCTG 481 ACTACAATTT AATCAAGTAT ATTGAACGAG GAGCCTTCAA TAAGCTCCAC AAACTGAAAG 541 TTCTCATTCT TAATGACAAT CTGATTTCAT TCCTTCCTGA TAATATTTTC CGATTCGCAT 601 CTTTGACCCA TCTGGATATA CGAGGGAACA GAATCCAGAA GCTCCCTTAT ATCGGGGTTC 661 TGGAACACAT TGGCCGTGTC GTTGAATTGC AACTGGAAGA TAACCCTTGG AACTGTAGCT 721 GTGATTTATT GCCCTTAAAA GCTTGGCTGG AGAACATGCC ATATAACATT TACATAGGAG 781 AAGCTATCTG TGAAACTCCC AGTGACTTAT ATGGAAGGCT TTTAAAAGAA ACCAACAAAC 841 AAGAGCTATG TCCCATGGGC ACCGGCAGTG ATTTTGACGT GCGCATCCTG CCTCCATCTC 901 AGCTGGAAAA TGGCTACACC ACTCCCAATG GTCACACTAC CCAAACATCT TTACACAGAT 961 TAGTAACTAA ACCACCAAAA ACAACAAATC CTTCCAAGAT CTCTGGAATC GTTGCAGGCA 1021 AAGCCCTCTC CAACCGCAAT CTCAGTCAGA TTGTGTCTTA CCAAACAAGG GTGCCTCCTC 1081 TAACACCTTG CCCGGCACCT TGCTTCTGCA AAACACACCC TTCAGATTTG GGACTAAGTG 1141 TGAACTGCCA AGAGAAAAAT ATACAGTCTA TGTCTGAACT GATACCGAAA CCTTTAAATG 1201 CGAAGAAGCT GCACGTCAAT GGCAATAGCA TCAAGGATGT GGACGTATCA GACTTCACTG 1261 ACTTTGAAGG ACTGGATTTG CTTCATTTAG GCAGCAATCA AATTACAGTG ATTAAGGGAG 1321 ACGTATTTCA CAATCTCACT AATTTACGCA GGCTATATCT CAATGGCAAT CAAATTGAGA 1381 GACTCTATCC TGAAATATTT TCAGGTCTTC ATAACCTGCA GTATCTGTAT TTGGAATACA 1441 ATTTGATTAA GGAAATCTCA GCAGGCACCT TTGACTCCAT GCCAAATTTG CAGTTACTGT 1501 ACTTAAACAA TAATCTCCTA AAGAGCCTGC CTGTTTACAT CTTTTCCGGA GCACCCTTAG 1561 CTAGACTGAA CCTGAGGAAC AACAAATTCA TGTACCTGCC TGTCAGTGGG GTCCTTGATC 1621 AGTTGCAATC TCTTACACAG ATTGACTTGG AGGGCAACCC ATGGGACTGT ACTTGTGACT 1681 TGGTGGCATT AAAGCTGTGG GTGGAGAAGT TGAGCGACGG GATTGTTGTG AAAGAACTGA 1741 AATGTGAGAC GCCTGTTCAG TTTGCCAACA TTGAACTGAA GTCCCTCAAA AATGAAATCT 1801 TATGTCCCAA ACTTTTAAAT AAGCCGTCTG CACCATTCAC AAGCCCTGCA CCTGCCATTA 1861 CATTCACCAC TCCTTTGGGT CCCATTCGAA GTCCTCCTGG TGGGCCAGTG CCTCTGTCTA 1921 TTTTAATCTT AAGTATCTTA GTGGTCCTCA TTTTAACGGT GTTTGTTGCT TTTTGCCTTC 1981 TTGTTTTTGT CCTGCGACGC AACAAGAAAC CAACAGTGAA GCACGAAGGC CTGGGGAATC 2041 CTGACTGTGG CTCCATGCAG CTGCAGCTAA GGAAGCATGA CCACAAGACC AATAAAAAAG 2101 ATGGACTGAG CACAGAAGCT TTCATTCCAC AAACTATAGA ACAGATGAGC AAGAGCCACA 2161 CTTGTGGCTT GAAAGAGTCG GAAACTGGGT TCATGTTTTC AGATCCTCCA GGACAGAAAG 2221 TTGTTATGAG AAATGTGGCC GACAAGGAGA AAGATTTATT ACATGTAGAT ACCAGGAAGA 2281 GACTGAGCAC AATTGATGAG CTGGATGAAT TATTCCCTAG CAGGGATTCC AATGTGTTTA 2341 TTCAGAATTT TCTTGAAAGC AAAAAGGAGT ATAATAGCAT AGGTGTCAGT GGCTTTGAGA 2401 TCCGCTATCC AGAAAAACAA CCAGACAAAA AAAGTAAGAA GTCACTGATA GGTGGCAACC 2461 ACAGTAAAAT TGTTGTGGAA CAAAGGAAGA GTGAGTATTT TGAACTGAAG GCGAAACTGC 2521 AGAGTTCCCC TGACTACCTA CAGGTCCTTG AGGAGCAAAC AGCTTTGAAC AAGATCTACC 2581 CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg 2641 aac