Construct: ORF ccsbBroadEn_09618
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004672.1_s300c1, BRDN0000391461
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC38A6 (145389)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 145389 | SLC38A6 | solute carrier family 38 me... | NM_153811.2 | 99.8% | 99.7% | 208T>A;684T>C |
| 2 | human | 145389 | SLC38A6 | solute carrier family 38 me... | XM_017021023.1 | 94.5% | 94% | (many diffs) |
| 3 | human | 145389 | SLC38A6 | solute carrier family 38 me... | XM_017021020.1 | 94.1% | 90.3% | (many diffs) |
| 4 | human | 145389 | SLC38A6 | solute carrier family 38 me... | XM_017021021.1 | 90.2% | 86.5% | (many diffs) |
| 5 | human | 145389 | SLC38A6 | solute carrier family 38 me... | XM_017021022.1 | 88.1% | 83.2% | (many diffs) |
| 6 | human | 145389 | SLC38A6 | solute carrier family 38 me... | XR_001750163.1 | 86.7% | (many diffs) | |
| 7 | human | 145389 | SLC38A6 | solute carrier family 38 me... | XM_017021024.1 | 85.6% | 81.9% | (many diffs) |
| 8 | human | 145389 | SLC38A6 | solute carrier family 38 me... | NM_001172702.1 | 83.9% | 83.1% | (many diffs) |
| 9 | human | 145389 | SLC38A6 | solute carrier family 38 me... | XM_017021025.1 | 82.5% | 79% | (many diffs) |
| 10 | human | 145389 | SLC38A6 | solute carrier family 38 me... | XM_017021026.1 | 82.5% | 79% | (many diffs) |
| 11 | human | 145389 | SLC38A6 | solute carrier family 38 me... | XR_002957534.1 | 74.4% | (many diffs) | |
| 12 | human | 145389 | SLC38A6 | solute carrier family 38 me... | XM_011536469.2 | 71.6% | 67.6% | (many diffs) |
| 13 | human | 145389 | SLC38A6 | solute carrier family 38 me... | XM_024449490.1 | 70.3% | 70.3% | 0_1ins405;279T>C |
| 14 | human | 145389 | SLC38A6 | solute carrier family 38 me... | XM_024449491.1 | 70.3% | 70.3% | 0_1ins405;279T>C |
| 15 | human | 145389 | SLC38A6 | solute carrier family 38 me... | XM_024449492.1 | 70.3% | 70.3% | 0_1ins405;279T>C |
| 16 | human | 145389 | SLC38A6 | solute carrier family 38 me... | NR_033344.2 | 68% | (many diffs) | |
| 17 | human | 145389 | SLC38A6 | solute carrier family 38 me... | XM_024449486.1 | 65.4% | 62.2% | (many diffs) |
| 18 | human | 145389 | SLC38A6 | solute carrier family 38 me... | XM_024449487.1 | 65.4% | 62.2% | (many diffs) |
| 19 | human | 145389 | SLC38A6 | solute carrier family 38 me... | XM_024449488.1 | 65.4% | 62.2% | (many diffs) |
| 20 | human | 145389 | SLC38A6 | solute carrier family 38 me... | XM_024449489.1 | 65.4% | 62.2% | (many diffs) |
| 21 | human | 145389 | SLC38A6 | solute carrier family 38 me... | XR_001750164.1 | 64.3% | (many diffs) | |
| 22 | human | 145389 | SLC38A6 | solute carrier family 38 me... | XM_024449493.1 | 61.5% | 58.4% | (many diffs) |
| 23 | human | 145389 | SLC38A6 | solute carrier family 38 me... | XM_006720050.2 | 55.8% | 55.9% | 0_1ins603;81T>C |
| 24 | human | 145389 | SLC38A6 | solute carrier family 38 me... | XM_024449497.1 | 55.8% | 55.9% | 0_1ins603;81T>C |
| 25 | human | 145389 | SLC38A6 | solute carrier family 38 me... | XM_024449494.1 | 51.3% | 48.4% | (many diffs) |
| 26 | human | 145389 | SLC38A6 | solute carrier family 38 me... | XM_024449495.1 | 51.3% | 48.4% | (many diffs) |
| 27 | human | 145389 | SLC38A6 | solute carrier family 38 me... | XM_024449496.1 | 51.3% | 48.4% | (many diffs) |
| 28 | mouse | 625098 | Slc38a6 | solute carrier family 38, m... | XM_011244154.2 | 80.5% | 79.6% | (many diffs) |
| 29 | mouse | 625098 | Slc38a6 | solute carrier family 38, m... | XM_006516118.2 | 74.5% | 75.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1437
- ORF length:
- 1368
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGAGGCGTCC TGGGGGAGCT TCAACGCTGA GCGGGGCTGG TATGTCTCTG 121 TCCAGCAGCC TGAAGAAGCG GAGGCCGAAG AGTTGAGTCC GTTGCTAAGC AACGAACTTC 181 ACAGACAGCG ATCCCCAGGT GTTTCATTTG GTTTATCAGT GTTTAATTTG ATGAATGCCA 241 TCATGGGAAG TGGCATCCTT GGCTTAGCTT ATGTTATGGC TAATACCGGT GTCTTTGGAT 301 TTAGCTTCTT GCTGCTGACA GTTGCTCTCC TGGCTTCTTA CTCAGTCCAT CTTCTGCTTA 361 GTATGTGTAT TCAGACAGCT GTAACATCTT ATGAAGATCT TGGACTCTTT GCATTTGGAT 421 TACCTGGAAA GTTGGTGGTG GCAGGCACCA TAATAATTCA GAATATTGGA GCTATGTCAT 481 CTTATCTTTT AATTATTAAA ACAGAGCTTC CTGCTGCTAT TGCAGAATTT TTGACTGGAG 541 ACTATAGTAG ATATTGGTAT CTTGATGGAC AAACACTACT AATAATCATA TGTGTTGGCA 601 TTGTGTTCCC TCTTGCACTT CTTCCCAAAA TAGGCTTTCT TGGCTACACA AGTAGTTTAT 661 CATTTTTCTT TATGATGTTC TTTGCTCTTG TGGTAATAAT TAAAAAATGG TCCATCCCTT 721 GTCCTCTGAC ATTAAATTAT GTAGAGAAAG GCTTCCAGAT TTCAAATGTT ACAGATGATT 781 GTAAGCCAAA GCTCTTTCAT TTCTCCAAAG AGAGTGCTTA TGCCTTACCA ACCATGGCTT 841 TTTCATTTCT CTGCCATACC TCAATATTGC CCATATACTG TGAACTTCAA AGTCCTTCAA 901 AGAAAAGAAT GCAGAATGTT ACCAATACAG CAATTGCTTT AAGTTTTCTC ATTTATTTTA 961 TATCTGCACT CTTTGGGTAC CTCACTTTTT ATGACAAAGT GGAGTCAGAA TTACTAAAAG 1021 GTTATAGTAA ATACTTATCA CATGATGTTG TTGTCATGAC TGTGAAGTTA TGCATACTAT 1081 TTGCTGTGCT TTTGACAGTC CCTCTAATCC ACTTCCCTGC CAGAAAAGCT GTAACAATGA 1141 TGTTTTTCTC CAATTTTCCA TTCTCATGGA TTCGCCATTT TTTGATCACT CTAGCACTCA 1201 ATATTATCAT CGTTTTACTT GCAATATATG TTCCTGACAT TAGAAATGTA TTTGGTGTAG 1261 TTGGTGCCAG TACATCAACA TGTTTGATTT TTATATTCCC AGGACTATTT TATCTTAAAC 1321 TTAGCAGAGA GGATTTTCTG TCATGGAAAA AGCTTGGGGC ATTCGTTTTG CTCATCTTTG 1381 GAATTTTGGT TGGGAATTTT AGTTTAGCAC TCATCATTTT TGATTGGATT AATAAATTGC 1441 CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg 1501 aac