Construct: ORF ccsbBroadEn_09642

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015613.1_s300c1, BRDN0000391488
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TRIM16L (147166)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 147166 TRIM16L tripartite motif containing... NM_001037330.2 99.9% 99.7% 125G>A
2 human 147166 TRIM16L tripartite motif containing... NM_001353220.2 99.9% 99.7% 125G>A
3 human 147166 TRIM16L tripartite motif containing... NM_001353222.2 99.9% 99.7% 125G>A
4 human 147166 TRIM16L tripartite motif containing... NM_001353223.2 99.9% 99.7% 125G>A
5 human 147166 TRIM16L tripartite motif containing... NM_001353224.2 99.9% 99.7% 125G>A
6 human 147166 TRIM16L tripartite motif containing... XM_011523690.2 99.9% 99.7% 125G>A
7 human 147166 TRIM16L tripartite motif containing... XM_017024245.1 99.9% 99.7% 125G>A
8 human 147166 TRIM16L tripartite motif containing... XM_017024246.1 99.9% 99.7% 125G>A
9 human 147166 TRIM16L tripartite motif containing... XM_017024247.1 99.9% 99.7% 125G>A
10 human 147166 TRIM16L tripartite motif containing... XM_017024248.1 99.9% 99.7% 125G>A
11 human 147166 TRIM16L tripartite motif containing... XM_017024249.1 99.9% 99.7% 125G>A
12 human 147166 TRIM16L tripartite motif containing... XM_017024250.1 99.9% 99.7% 125G>A
13 human 147166 TRIM16L tripartite motif containing... XM_017024252.1 99.9% 99.7% 125G>A
14 human 10626 TRIM16 tripartite motif containing 16 NM_001348124.1 98.5% 97.1% (many diffs)
15 human 10626 TRIM16 tripartite motif containing 16 NM_001348125.1 98.5% 97.1% (many diffs)
16 human 147166 TRIM16L tripartite motif containing... XM_011523689.3 88% 87.8% 1_141del;266G>A
17 human 147166 TRIM16L tripartite motif containing... NM_001353219.2 86.4% 86.3% 1_162del;287G>A
18 human 10626 TRIM16 tripartite motif containing 16 NM_001348126.1 85.3% 84% (many diffs)
19 human 10626 TRIM16 tripartite motif containing 16 NM_001348121.1 79% 77.8% (many diffs)
20 human 10626 TRIM16 tripartite motif containing 16 NM_001348122.1 79% 77.8% (many diffs)
21 human 147166 TRIM16L tripartite motif containing... NM_001353221.2 77.2% 77.1% 1_306del;431G>A
22 human 10626 TRIM16 tripartite motif containing 16 NM_001348119.1 60.8% 59.9% (many diffs)
23 human 10626 TRIM16 tripartite motif containing 16 NM_001348120.1 60.8% 59.9% (many diffs)
24 human 10626 TRIM16 tripartite motif containing 16 NM_006470.4 60.8% 59.9% (many diffs)
25 human 147166 TRIM16L tripartite motif containing... NM_001353225.2 49.3% 25% 125G>A;199_200ins166;516_517ins362
26 mouse 94092 Trim16 tripartite motif-containing 16 XM_006534580.3 63.1% 62% (many diffs)
27 mouse 94092 Trim16 tripartite motif-containing 16 NM_053169.2 53.2% 52.3% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1113
ORF length:
1044
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GCAGTTTGGG GAACTCCTTG CTGCTGTGAG GAAGGCCCAG GCCAATGTGA
121TGCTCTTCTT AGAGGAGAAG GAGCAAGCTG CGCTGAGCCA GGCCAACGGT ATCAAGGCCC
181ACCTGGAGTA CAAGAGTGCC GAGATGGAGA AGAGTAAGCA GGAGCTGGAG ACGATGGCGG
241CCATCAGCAA CACTGTCCAG TTCTTGGAGG AGTACTGCAA GTTTAAGAAC ACTGAAGACA
301TCACCTTCCC TAGTGTTTAC ATAGGGCTGA AGGATAAACT CTCGGGCATC CGCAAAGTTA
361TCACGGAATC CACTGTACAC TTAATCCAGT TGCTGGAGAA CTATAAGAAA AAGCTCCAGG
421AGTTTTCCAA GGAAGAGGAG TATGACATCA GAACTCAAGT GTCTGCCATT GTTCAGCGCA
481AATATTGGAC TTCCAAACCT GAGCCCAGCA CCAGGGAACA GTTCCTCCAA TATGTGCATG
541ACATCACGTT CGACCCGGAC ACAGCACACA AGTATCTCCG GCTGCAGGAG GAGAACCGCA
601AGGTCACCAA CACCACGCCC TGGGAGCATC CCTACCCGGA CCTCCCCAGC AGGTTCCTGC
661ACTGGCGGCA GGTGCTGTCC CAGCAGAGTC TGTACCTGCA CAGGTACTAT TTTGAGGTGG
721AGATCTTCGG GGCAGGCACC TATGTTGGCC TGACCTGCAA AGGCATCGAC CAGAAAGGGG
781AGGAGCGCAG CAGTTGCATT TCCGGAAACA ACTTCTCCTG GAGCCTCCAA TGGAACGGGA
841AGGAGTTCAC GGCCTGGTAC AGTGACATGG AGACCCCACT CAAAGCTGGC CCTTTCTGGA
901GGCTCGGGGT CTATATTGAC TTCCCAGGAG GGATCCTTTC CTTCTATGGC GTAGAGTATG
961ATTCCATGAC TCTGGTTCAC AAGTTTGCCT GCAAGTTTTC AGAACCAGTC TATGCTGCCT
1021TCTGGCTTTC CAAGAAGGAA AACGCCATCC GGATTGTAGA TCTGGGAGAG GAACCCGAGA
1081AGCCAGCACC GTCCTTGGTG GGGACTGCTC CCTTGCCAAC TTTCTTGTAC AAAGTtggca
1141ttataagaaa gcattgctta tcaatttgtt gcaacgaac

Download FASTA (ORF) (Full)