Construct: ORF ccsbBroadEn_09651
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013540.1_s300c1, BRDN0000398582
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- FAM98C (147965)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 147965 | FAM98C | family with sequence simila... | NM_174905.3 | 99.9% | 99.7% | 302A>N |
| 2 | human | 147965 | FAM98C | family with sequence simila... | XR_935748.2 | 79.1% | (many diffs) | |
| 3 | human | 147965 | FAM98C | family with sequence simila... | NM_001351675.1 | 76.4% | 76.2% | 302A>N;554_555ins78;670_671ins168 |
| 4 | human | 147965 | FAM98C | family with sequence simila... | XM_017026354.1 | 55.7% | 53.2% | 302A>N;553_554ins31;585_586ins431 |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1116
- ORF length:
- 1047
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGAGGCGGTG AAGGCGGAAG CGTGGGAGGG GGCCGCGGTG GCCCAGGACC 121 TGCTGGCTCT GGGGTATGGA GGTGTCCCGG GGGCGGCGTC GCGGGGCGCC TCATGCCCAG 181 ACTTCAGGGG GCTGTGCGTG CGGCTGGCGG CGGAGCTGGC GACGCTGGGC GCCCTCGAGC 241 AGCAGCGAGA GGCGGGCGCG GAGGTGCTGA GCGCCGGCGA CGGCCCTGGC GCGGAGGAGG 301 ACTTTCTGCG GCAGCTCGGC AGCCTGCTGC GGGAGCTGCA CTGCCCGGAT CGCGCGCTCT 361 GCGGCGGGGN TGGCGCGGCT GCGCTTCGGG AACCCGGTGC CGGACTGCGC CTGCTGCGCT 421 TTCTCTGCTC AGAGCTCCAA GCCACCCGCC TCCTGTGCCT CCGCTCTCTG CTGGATCCGA 481 GTCCTAGGCC ACCCCTTGGT GAAGGGGTAG TGGAGGGAGC CGGCATGGTC CAAGAACTGG 541 ACCTTACCCT CCAAGCCCTG GGGCTGCCCA GACCTGCACC AGGGACCCCC GCCAGCCAGC 601 TGCTGCAGGA GTTGCATGCT AAGATCTCAG AGCTGCAGCC TTCTCTGCCC CCAGGGTCCC 661 TGCAGCCCCT CCTCAGCTGC TCGCTAGATG CACCCAGATG GGAAGCGTTG GAGTCTCTGT 721 CCCAAAGCCT CAGAGATCAG TACCGCTGCC GCCGCTGCCT CCTCCTCAAG CGCCTTGACC 781 TCACTACATC TGCTTTCCAC TGGAGTGACC GGGCAGAGGC CCAAGGAGAG GCCATGAGGG 841 CAGTGCTGAT CCCAATTCGA GAGGTTCTGA CCCCAGAATC GGACATCTCC ATTGCACACG 901 TTCTGGCTGC CCGAGCCGAC CTGTCTTGTC TCGTCCCAGC CACCAGCGTG GCTGTCCGCA 961 GAGGGACCTG CTGTGCCATC AACAAGGTGC TTATGGGCAA CGTTCCAGAC CGGGGGGGCC 1021 GCCCAAATGA GCTGGAGCCT CCCATGCCCA CCTGGAGGAG CCGAAGAGAG GATGGAGGCC 1081 CCCAGTGTTG GGGTCGCAAG AAGAAGAAGA AGAAGTTGCC AACTTTCTTG TACAAAGTtg 1141 gcattataag aaagcattgc ttatcaattt gttgcaacga ac