Transcript: Human NM_001351675.1

Homo sapiens family with sequence similarity 98 member C (FAM98C), transcript variant 2, mRNA.

Source:
NCBI, updated 2018-06-15
Taxon:
Homo sapiens (human)
Gene:
FAM98C (147965)
Length:
1045
CDS:
20..823

Additional Resources:

NCBI RefSeq record:
NM_001351675.1
NBCI Gene record:
FAM98C (147965)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001351675.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000436900 GAACTGGACCTTACCCTCCAA pLKO_005 485 CDS 100% 2.640 3.696 N FAM98C n/a
2 TRCN0000434235 ATGCTAATGCTATCGGTAATC pLKO_005 863 3UTR 100% 10.800 8.640 N FAM98C n/a
3 TRCN0000166402 CAAAGCCTCAGAGATCAGTAC pLKO.1 596 CDS 100% 4.050 2.835 N FAM98C n/a
4 TRCN0000166625 CCTCACTACATCTGCTTTCCA pLKO.1 652 CDS 100% 3.000 2.100 N FAM98C n/a
5 TRCN0000166204 CTACATCTGCTTTCCACTGGA pLKO.1 657 CDS 100% 2.640 1.848 N FAM98C n/a
6 TRCN0000435802 TCTGCTGGATCCGAGTCCTAG pLKO_005 418 CDS 100% 1.350 0.945 N FAM98C n/a
7 TRCN0000164785 CCAAAGCCTCAGAGATCAGTA pLKO.1 595 CDS 100% 4.950 2.970 N FAM98C n/a
8 TRCN0000160007 CAAGAAGAAGAAGAAGAAGTA pLKO.1 802 CDS 100% 4.950 2.475 Y FAM98C n/a
9 TRCN0000166109 GCAGGAGTTGCATGCTAAGAT pLKO.1 556 CDS 100% 5.625 3.938 N FAM98C n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001351675.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_09651 pDONR223 100% 76.4% 76.2% None 302A>N;554_555ins78;670_671ins168 n/a
2 ccsbBroad304_09651 pLX_304 0% 76.4% 76.2% V5 302A>N;554_555ins78;670_671ins168 n/a
3 TRCN0000475873 TAACTGGTAGTCAAAAGGATACTC pLX_317 33.7% 76.4% 76.2% V5 302A>N;554_555ins78;670_671ins168 n/a
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