Construct: ORF ccsbBroadEn_09658

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018519.1_s300c1, BRDN0000456566
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
MFSD4A (148808)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 148808 MFSD4A major facilitator superfami... NM_181644.5 99.6% 99.6% (many diffs)
2 human 148808 MFSD4A major facilitator superfami... XM_011509229.3 82.8% 82.8% (many diffs)
3 mouse 213006 Mfsd4a major facilitator superfami... NM_001114662.1 86.9% 86.7% (many diffs)
4 mouse 213006 Mfsd4a major facilitator superfami... NM_172510.4 83.6% 84% (many diffs)
5 mouse 213006 Mfsd4a major facilitator superfami... XM_006529344.3 83.6% 84% (many diffs)
6 mouse 213006 Mfsd4a major facilitator superfami... XR_001783717.1 51.2% (many diffs)
7 mouse 213006 Mfsd4a major facilitator superfami... XM_006529345.3 46.2% 46.4% (many diffs)
8 mouse 213006 Mfsd4a major facilitator superfami... XM_017319650.1 46.2% 46.4% (many diffs)
9 mouse 213006 Mfsd4a major facilitator superfami... XR_001783716.1 32.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1608
ORF length:
1542
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGG CTGCGACGGC CGCGTTTCGG GGCTGCTCCG CCGCAACCTG CAGCCCACGC
121TCACCTACTG GAGCGTCTTC TTCAGCTTCG GCCTGTGCAT CGCCTTCCTG GGGCCCACGC
181TGCTGGACCT GCGCTGTCAG ACGCACAGCT CGCTGCCCCA GATCTCCTGG GTCTTCTTCT
241CGCAGCAGCT CTGCCTCCTG CTGGGCAGCG CCCTCGGGGG CGTCTTCAAA AGGACCCTGG
301CCCAGTCACT ATGGGCCCTG TTCACCTCCT CTCTGGCCAT CTCCCTGGTG TTTGCCGTCA
361TCCCCTTCTG CCGCGACGTG AAGGTGCTGG CCTCAGTCAT GGCGCTGGCG GGCTTGGCCA
421TGGGCTGCAT CGACACCGTG GCCAACATGC AGCTGGTAAG GATGTACCAG AAGGACTCGG
481CCGTCTTCCT CCAGGTGCTC CATTTCTTCG TGGGCTTTGG TGCTCTGCTG AGCCCCCTTA
541TTGCTGACCC TTTCCTGTCT GAGGCCAACT GCTTGCCTGC CAATAGCACG GCCAACACCA
601CCTCCCGAGG CCACCTGTTC CATGTCTCCA GGGTGCTGGG CCAGCACCAC GTAGATGCCA
661AGCCTTGGTC CAACCAGACG TTCCCAGGGC TGACTCCAAA GGACGGGGCA GGGACCCGAG
721TGTCCTATGC CTTCTGGATC ATGGCCATCA TCAATCTTCC AGTGCCCATG GCTGTGCTGA
781TGCTGCTGTC CAAGGAGCGG CTGCTGACCT GCTGTCCCCA GAGGAGGCCC CTGCTTCTGT
841CTGCTGATGA GCTTGCCTTG GAGACACAGC CTCCTGAGAA GGAAGATGCC TCCTCACTGC
901CCCCAAAGTT TCAGTCACAC CTAGGGCATG AGGACCTGTT CAGCTGCTGC CAAAGGAAGA
961ACCTCAGAGG AGCCCCTTAT TCCTTCTTTG CCATCCACAT CACGGCCGCC CTGGTCCTGT
1021TCATGACGGA TGGGTTGACG GGTGCCTATT CCGCCTTCGT GTACAGCTAT GCTGTGGAGA
1081AGCCCCTGTC TGTGGGACAC AAGGTGGCTG GCTACCTCCC CAGCCTCTTC TGGGGCTTCA
1141TCACACTGGG CCGGCTCCTC TCCATTCCCA TATCCTCAAG AATGAAGCCG GCCACCATGG
1201TTTTCATCAA CGTGGTTGGC GTGGTGGTGA CGTTCCTGGT GCTGCTTATT TTCTCCTACA
1261ACGTCGTCTT CCTGTTCGTG GGGACGGCAA GCCTGGGCCT GTTTCTCAGC AGCACCTTTC
1321CCAGCATGCT GGCCTACACG GAGGACTCGC TGCAGTACAA AGGCTGTGCA ACCACAGTGC
1381TGGTGACAGG GGCAGGAGTT GGCGAGATGG TGCTGCAGAT GCTGGTTGGT TCGATATTCC
1441AGGCTCAGGG CAGCTATAGT TTCCTGGTCT GTGGCGTGAT CTTTGGTTGT CTGGCTTTTA
1501CCTTCTATAT CTTGCTCCTG TTTTTCCACA GGATGCACCC TGGACTCCCA TCAGTTCCTA
1561CCCAAGACAG ATCAATTGGA ATGGAAAACT CTGAGTGCTA CCAGAGGTAC CCAACTTTCT
1621TGTACAAAGT TGGcattata agaaagcatt gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)