Construct: ORF ccsbBroadEn_09673
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004404.1_s300c1, BRDN0000390039
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- COMMD1 (150684)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 150684 | COMMD1 | copper metabolism domain co... | NM_152516.3 | 99.8% | 100% | 492T>C |
| 2 | human | 150684 | COMMD1 | copper metabolism domain co... | XM_011532558.2 | 83.8% | 81% | (many diffs) |
| 3 | human | 150684 | COMMD1 | copper metabolism domain co... | XM_011532559.2 | 68.5% | 68.4% | 0_1ins177;2T>A;315T>C |
| 4 | human | 150684 | COMMD1 | copper metabolism domain co... | NM_001321781.2 | 65% | 65.2% | 0_1ins198;294T>C |
| 5 | human | 150684 | COMMD1 | copper metabolism domain co... | NM_001321782.2 | 65% | 65.2% | 0_1ins198;294T>C |
| 6 | human | 150684 | COMMD1 | copper metabolism domain co... | NM_001371765.1 | 65% | 65.2% | 0_1ins198;294T>C |
| 7 | human | 150684 | COMMD1 | copper metabolism domain co... | XM_017003412.1 | 65% | 65.2% | 0_1ins198;294T>C |
| 8 | mouse | 17846 | Commd1 | COMM domain containing 1 | NM_144514.2 | 84.8% | 83.6% | (many diffs) |
| 9 | mouse | 17846 | Commd1 | COMM domain containing 1 | XM_006514564.3 | 56.9% | 55.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 636
- ORF length:
- 570
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC GGCGGGCGAG CTTGAGGGTG GCAAACCCCT GAGCGGGCTG CTGAATGCGC 121 TGGCCCAGGA CACTTTCCAC GGGTACCCCG GCATCACAGA GGAGCTGCTA CGGAGCCAGC 181 TATATCCAGA GGTGCCACCC GAGGAGTTCC GCCCCTTTCT GGCAAAGATG AGGGGGATTC 241 TTAAGTCTAT TGCGTCTGCA GACATGGATT TCAACCAGCT GGAGGCATTC TTGACTGCTC 301 AAACCAAAAA GCAAGGTGGG ATCACATCTG ACCAAGCTGC TGTCATTTCC AAATTCTGGA 361 AGAGCCACAA GACAAAAATC CGTGAGAGCC TCATGAACCA GAGCCGCTGG AATAGCGGGC 421 TTCGGGGCCT GAGCTGGAGA GTTGATGGCA AGTCTCAGTC AAGGCACTCA GCTCAAATAC 481 ACACACCTGT TGCCATTATA GAGCTGGAAT TAGGCAAATA TGGACAGGAA TCTGAATTTC 541 TGTGTTTGGA ATTTGACGAG GTCAAAGTCA ACCAAATTCT GAAGACGCTG TCAGAGGTAG 601 AAGAAAGTAT CAGCACACTG ATCAGCCAGC CTAACTGCCC AACTTTCTTG TACAAAGTtg 661 gcattataag aaagcattgc ttatcaattt gttgcaacga ac