Construct: ORF ccsbBroadEn_09690

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017108.1_s300c1, BRDN0000389848
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
JAKMIP1 (152789)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 152789 JAKMIP1 janus kinase and microtubul... NM_001306133.1 99.8% 99.8% 339G>A;489G>T;525T>C
2 human 152789 JAKMIP1 janus kinase and microtubul... NM_144720.4 99.8% 99.8% 339G>A;489G>T;525T>C
3 human 152789 JAKMIP1 janus kinase and microtubul... XM_024453911.1 99.8% 99.8% 339G>A;489G>T;525T>C
4 human 152789 JAKMIP1 janus kinase and microtubul... XM_017007796.1 89.8% 86.1% (many diffs)
5 human 152789 JAKMIP1 janus kinase and microtubul... XM_017007795.1 75% 73.6% (many diffs)
6 human 152789 JAKMIP1 janus kinase and microtubul... XM_017007794.1 74.4% 73% (many diffs)
7 human 152789 JAKMIP1 janus kinase and microtubul... NM_001099433.2 74.1% 72.8% (many diffs)
8 human 152789 JAKMIP1 janus kinase and microtubul... XM_017007793.1 74.1% 72.8% (many diffs)
9 human 152789 JAKMIP1 janus kinase and microtubul... XM_017007792.1 73.8% 72.4% (many diffs)
10 human 152789 JAKMIP1 janus kinase and microtubul... NM_001306134.1 73.6% 73.6% 128_129ins495
11 human 152789 JAKMIP1 janus kinase and microtubul... XM_011513400.2 73.6% 73.6% 128_129ins495
12 human 152789 JAKMIP1 janus kinase and microtubul... XM_017007791.1 73.4% 72.1% (many diffs)
13 human 152789 JAKMIP1 janus kinase and microtubul... XM_017007788.1 73.1% 71.7% (many diffs)
14 human 152789 JAKMIP1 janus kinase and microtubul... XM_017007789.1 73.1% 71.7% (many diffs)
15 human 152789 JAKMIP1 janus kinase and microtubul... XM_017007790.1 73.1% 71.7% (many diffs)
16 human 152789 JAKMIP1 janus kinase and microtubul... XM_017007799.1 54.4% 53% (many diffs)
17 human 152789 JAKMIP1 janus kinase and microtubul... XM_017007797.1 53.7% 52.3% (many diffs)
18 human 152789 JAKMIP1 janus kinase and microtubul... XM_017007798.1 53.7% 52.3% (many diffs)
19 mouse 76071 Jakmip1 janus kinase and microtubul... NM_178394.4 87.9% 95.5% (many diffs)
20 mouse 76071 Jakmip1 janus kinase and microtubul... XM_017321139.1 87.9% 95.5% (many diffs)
21 mouse 76071 Jakmip1 janus kinase and microtubul... XM_011240791.2 66.5% 71.3% (many diffs)
22 mouse 76071 Jakmip1 janus kinase and microtubul... NM_001347348.1 64.9% 68% (many diffs)
23 mouse 76071 Jakmip1 janus kinase and microtubul... XM_006504174.3 64.9% 68% (many diffs)
24 mouse 76071 Jakmip1 janus kinase and microtubul... XM_011240790.2 64.3% 67.2% (many diffs)
25 mouse 76071 Jakmip1 janus kinase and microtubul... XM_011240789.2 64% 67% (many diffs)
26 mouse 76071 Jakmip1 janus kinase and microtubul... XM_011240784.2 63.7% 66.7% (many diffs)
27 mouse 76071 Jakmip1 janus kinase and microtubul... XM_011240785.2 63.7% 66.7% (many diffs)
28 mouse 76071 Jakmip1 janus kinase and microtubul... XM_011240786.2 63.7% 66.7% (many diffs)
29 mouse 76071 Jakmip1 janus kinase and microtubul... XM_011240787.2 63.7% 66.7% (many diffs)
30 mouse 76071 Jakmip1 janus kinase and microtubul... XM_011240788.2 63.7% 66.7% (many diffs)
31 mouse 76071 Jakmip1 janus kinase and microtubul... XM_017321137.1 63.7% 66.7% (many diffs)
32 mouse 76071 Jakmip1 janus kinase and microtubul... XM_017321138.1 63.7% 66.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1944
ORF length:
1878
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTC GAAGAAAGGC CGGAGCAAGG GCGAGAAGCC CGAGATGGAG ACGGACGCGG
121TGCAGATGGC CAACGAGGAG CTGCGGGCCA AGCTGACCAG CATTCAGATC GAGTTCCAGC
181AGGAAAAAAG CAAGGTGGGC AAACTGCGCG AGCGGCTGCA GGAGGCGAAG CTGGAGCGCG
241AGCAGGAGCA GCGACGGCAC ACGGCCTACA TTTCGGAGCT CAAGGCCAAG CTGCATGAGG
301AGAAGACCAA GGAGCTGCAG GCGCTGCGCG AGGGGCTCAT CCGGCAGCAC GAGCAGGAGG
361CGGCGCGCAC CGCCAAGATC AAGGAGGGCG AGCTGCAGCG GCTACAGGCC ACGCTGAACG
421TGCTGCGCGA CGGCGCGGCC GACAAGGTCA AGACGGCGCT GCTGACCGAG GCGCGCGAGG
481AGGCGCGCAG GGCCTTCGAT GGAGAGCGCC TGCGGCTGCA GCAGGAGATC CTGGAGCTCA
541AGGCAGCGCG CAATCAGGCA GAGGAGGCGC TCAGTAACTG CATGCAGGCC GACAAGACCA
601AGGCAGCCGA CCTGCGTGCC GCCTACCAGG CGCACCAAGA CGAGGTGCAC CGCATCAAGC
661GCGAGTGCGA GCGCGACATC CGCAGGCTGA TGGATGAGAT CAAAGGGAAA GACCGTGTGA
721TTCTGGCCTT GGAGAAGGAA CTTGGCGTGC AGGCTGGGCA GACCCAGAAG CTGCTTCTGC
781AGAAAGAGGC TTTGGATGAG CAGCTGGTTC AGGTCAAGGA GGCCGAGCGG CACCACAGTA
841GTCCAAAGAG AGAGCTCCCG CCCGGGATCG GGGACATGGT GGAGCTCATG GGCGTCCAGG
901ATCAACATAT GGACGAGCGA GATGTGAGGC GATTTCAACT AAAAATTGCT GAACTGAATT
961CAGTGATACG GAAGCTGGAA GACAGAAATA CGCTGTTGGC AGATGAGAGG AATGAACTGC
1021TGAAACGCTC ACGAGAGACC GAGGTTCAGC TGAAGCCCCT GGTGGAGAAG AACAAGCGGA
1081TGAACAAGAA GAATGAGGAT CTGTTGCAGA GTATCCAGAG GATGGAGGAG AAAATCAAGA
1141ACCTCACGCG GGAAAACGTG GAAATGAAAG AAAAGCTGTC AGCGCAGGCG TCTCTGAAGC
1201GGCATACCTC CTTGAATGAC CTCAGCCTGA CGAGGGATGA GCAGGAGATC GAGTTCCTGA
1261GGCTGCAGGT GCTGGAGCAG CAGCACGTCA TTGACGACCT CTCACTGGAG AGAGAACGGC
1321TGTTGCGCTC CAAAAGGCAT CGAGGGAAAA GTCTGAAACC GCCCAAGAAG CATGTTGTGG
1381AGACATTTTT TGGATTTGAT GAGGAGTCTG TGGACTCAGA AACGTTGTCC GAAACATCCT
1441ACAACACAGA CAGGACAGAC AGGACCCCAG CCACGCCCGA AGAAGACTTG GACGATGCCA
1501CAGCCCGAGA GGAGGCTGAC CTGCGCTTCT GCCAGCTGAC CCGGGAGTAC CAGGCCCTGC
1561AACGCGCCTA CGCCCTGCTC CAGGAGCAGG TGGGAGGCAC GCTGGACGCT GAGAGGGAGG
1621CCCGGACTCG GGAGCAGCTA CAAGCTGATC TGCTGAGGTG TCAGGCCAAA ATCGAAGATT
1681TGGAGAAGTT ACTGGTTGAG AAGGGACAGG ATTCCAAGTG GGTTGAAGAG AAGCAGCTGC
1741TCATCAGAAC AAACCAAGAC TTGCTGGAAA AGATTTACAG ACTGGAAATG GAAGAGAACC
1801AGCTGAAGAA TGAAATGCAA GACGCCAAGG ATCAGAACGA GCTGTTAGAA TTCAGAGTGC
1861TAGAACTCGA AGTAAGAGAC TCTATCTGTT GTAAACTCTC AAACGGAGCA GACATTCTCT
1921TTGAACCCAA ACTGAAATTC ATGTACCCAA CTTTCTTGTA CAAAGTtggc attataagaa
1981agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)