Construct: ORF ccsbBroadEn_09697
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005190.1_s300c1, BRDN0000456632
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- MARVELD2 (153562)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 153562 | MARVELD2 | MARVEL domain containing 2 | NM_001038603.3 | 99.9% | 99.8% | 98C>T |
| 2 | human | 153562 | MARVELD2 | MARVEL domain containing 2 | XM_005248445.4 | 99.9% | 99.8% | 98C>T |
| 3 | human | 153562 | MARVELD2 | MARVEL domain containing 2 | XM_005248446.4 | 99.9% | 99.8% | 98C>T |
| 4 | human | 153562 | MARVELD2 | MARVEL domain containing 2 | NM_001244734.2 | 97.7% | 97.6% | 98C>T;1145_1146ins36 |
| 5 | human | 153562 | MARVELD2 | MARVEL domain containing 2 | XM_005248447.4 | 97.7% | 97.6% | 98C>T;1145_1146ins36 |
| 6 | mouse | 218518 | Marveld2 | MARVEL (membrane-associatin... | NM_001038602.4 | 84.3% | 86.9% | (many diffs) |
| 7 | mouse | 218518 | Marveld2 | MARVEL (membrane-associatin... | XM_006517605.1 | 84.3% | 86.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1740
- ORF length:
- 1674
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTC AAATGATGGA AGATCCAGGA ATCGGGACAG GCGCTACGAT GAGGTCCCAA 121 GCGACCTGCC CTATCAAGAT ACCACCATAA GAACCCACCC AATTCTTCAT GACAGTGAGC 181 GGGCAGTGAG CGCTGATCCC TTGCCACCAC CCCCTCTCCC ATTACAGCCA CCATTCGGCC 241 CAGACTTCTA CTCAAGTGAC ACAGAAGAAC CAGCTATAGC GCCAGATCTC AAACCAGTAA 301 GGCGCTTTGT CCCTGACTCC TGGAAGAACT TTTTCAGAGG GAAGAAAAAG GACCCCGAAT 361 GGGATAAGCC GGTGTCTGAT ATCAGGTACA TCTCCGATGG AGTGGAGTGT TCACCACCAG 421 CCTCTCCAGC AAGACCAAAC CACCGTTCGC CCCTCAACTC CTGCAAAGAT CCCTACGGAG 481 GGTCAGAAGG AACCTTTAGT TCCCGGAAAG AGGCTGACGC AGTGTTTCCC CGGGATCCCT 541 ATGGATCTCT AGACCGACAC ACACAAACAG TTCGAACATA CAGTGAGAAG GTGGAGGAGT 601 ATAACCTGAG ATACTCCTAC ATGAAGTCGT GGGCAGGCCT GCTGAGAATA CTGGGTGTGG 661 TGGAGCTGCT TTTGGGGGCC GGTGTCTTTG CTTGTGTCAC AGCTTACATT CACAAGGACA 721 GTGAGTGGTA CAACTTGTTT GGATATTCAC AACCGTATGG CATGGGAGGC GTTGGTGGAT 781 TGGGCAGTAT GTATGGGGGC TATTACTACA CTGGCCCTAA GACCCCTTTT GTACTCGTGG 841 TTGCTGGATT AGCTTGGATC ACCACCATTA TTATTCTGGT TCTTGGCATG TCCATGTATT 901 ACCGGACCAT TCTTCTGGAC TCTAATTGGT GGCCCCTAAC TGAATTTGGA ATTAACGTTG 961 CCTTGTTTAT TTTGTATATG GCCGCAGCCA TAGTCTATGT GAATGATACC AACCGAGGTG 1021 GCCTCTGCTA CTATCCGTTA TTTAATACAC CAGTGAATGC AGTGTTCTGC CGGGTAGAAG 1081 GAGGACAGAT AGCTGCAATG ATCTTCCTGT TTGTCACCAT GATAGTTTAT CTCATTAGTG 1141 CTTTGGTTTG CCTAAAGTTA TGGAGGCATG AGGCAGCTCG GAGACATAGA GAATATATGG 1201 AACAACAGGA GATAAATGAG CCATCATTGT CATCGAAAAG GAAAATGTGT GAAATGGCCA 1261 CCAGTGGTGA CAGACAAAGA GACTCAGAAG TTAATTTCAA GGAACTGAGA ACAGCAAAAA 1321 TGAAACCTGA ACTACTGAGT GGACACATCC CCCCAGGCCA CATTCCTAAA CCTATCGTGA 1381 TGCCCGACTA TGTGGCAAAA TACCCTGTGA TTCAGACAGA TGATGAGCGA GAACGCTATA 1441 AAGCTGTGTT CCAAGACCAG TTTTCAGAGT ACAAAGAGCT GTCTGCAGAA GTTCAGGCTG 1501 TCCTGAGGAA GTTTGATGAG CTGGATGCAG TGATGAGCAG ATTGCCACAT CATTCGGAAA 1561 GCCGACAGGA ACATGAGAGA ATTTCAAGAA TCCATGAAGA GTTTAAGAAA AAAAAGAATG 1621 ATCCTACATT TCTGGAAAAA AAAGAACGCT GTGATTACCT AAAGAATAAA CTTTCTCACA 1681 TAAAGCAAAG AATTCAAGAA TATGATAAAG TAATGAATTG GGATGTACAA GGTTATTCTT 1741 ACCCAACTTT CTTGTACAAA GTTGGcatta taagaaagca ttgcttatca atttgttgca 1801 acgaac