Construct: ORF ccsbBroadEn_09716

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013901.1_s300c1, BRDN0000457023
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LINGO2 (158038)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 158038 LINGO2 leucine rich repeat and Ig ... NM_001258282.3 99.9% 100% 312C>G
2 human 158038 LINGO2 leucine rich repeat and Ig ... NM_001354574.2 99.9% 100% 312C>G
3 human 158038 LINGO2 leucine rich repeat and Ig ... NM_001354575.2 99.9% 100% 312C>G
4 human 158038 LINGO2 leucine rich repeat and Ig ... NM_152570.3 99.9% 100% 312C>G
5 human 158038 LINGO2 leucine rich repeat and Ig ... XM_011517724.2 99.9% 100% 312C>G
6 human 158038 LINGO2 leucine rich repeat and Ig ... XM_011517728.2 99.9% 100% 312C>G
7 human 158038 LINGO2 leucine rich repeat and Ig ... XM_017014303.2 99.9% 100% 312C>G
8 human 158038 LINGO2 leucine rich repeat and Ig ... XM_017014304.1 99.9% 100% 312C>G
9 human 158038 LINGO2 leucine rich repeat and Ig ... XM_017014305.1 99.9% 100% 312C>G
10 human 158038 LINGO2 leucine rich repeat and Ig ... XM_017014306.2 99.9% 100% 312C>G
11 human 158038 LINGO2 leucine rich repeat and Ig ... XM_017014307.1 99.9% 100% 312C>G
12 human 158038 LINGO2 leucine rich repeat and Ig ... XR_001746186.2 14.4% 1_2553del;2865C>G;4372_12580del
13 mouse 242384 Lingo2 leucine rich repeat and Ig ... NM_001165999.1 91.6% 97.6% (many diffs)
14 mouse 242384 Lingo2 leucine rich repeat and Ig ... NM_001166000.1 91.6% 97.6% (many diffs)
15 mouse 242384 Lingo2 leucine rich repeat and Ig ... NM_001166001.1 91.6% 97.6% (many diffs)
16 mouse 242384 Lingo2 leucine rich repeat and Ig ... NM_175516.4 91.6% 97.6% (many diffs)
17 mouse 242384 Lingo2 leucine rich repeat and Ig ... XM_006537902.2 91.6% 97.6% (many diffs)
18 mouse 242384 Lingo2 leucine rich repeat and Ig ... XM_006537903.2 91.6% 97.6% (many diffs)
19 mouse 242384 Lingo2 leucine rich repeat and Ig ... XM_006537904.3 91.6% 97.6% (many diffs)
20 mouse 242384 Lingo2 leucine rich repeat and Ig ... XM_011250017.2 91.6% 97.6% (many diffs)
21 mouse 242384 Lingo2 leucine rich repeat and Ig ... XM_011250018.2 91.6% 97.6% (many diffs)
22 mouse 242384 Lingo2 leucine rich repeat and Ig ... XM_011250019.2 91.6% 97.6% (many diffs)
23 mouse 242384 Lingo2 leucine rich repeat and Ig ... XM_011250020.2 91.6% 97.6% (many diffs)
24 mouse 242384 Lingo2 leucine rich repeat and Ig ... XM_011250022.2 91.6% 97.6% (many diffs)
25 mouse 242384 Lingo2 leucine rich repeat and Ig ... XM_011250023.2 91.6% 97.6% (many diffs)
26 mouse 242384 Lingo2 leucine rich repeat and Ig ... XM_011250025.2 91.6% 97.6% (many diffs)
27 mouse 242384 Lingo2 leucine rich repeat and Ig ... XM_011250026.2 91.6% 97.6% (many diffs)
28 mouse 242384 Lingo2 leucine rich repeat and Ig ... XM_017320195.1 91.6% 97.6% (many diffs)
29 mouse 242384 Lingo2 leucine rich repeat and Ig ... XM_017320196.1 91.6% 97.6% (many diffs)
30 mouse 242384 Lingo2 leucine rich repeat and Ig ... XM_017320197.1 91.6% 97.6% (many diffs)
31 mouse 242384 Lingo2 leucine rich repeat and Ig ... XM_017320198.1 91.6% 97.6% (many diffs)
32 mouse 242384 Lingo2 leucine rich repeat and Ig ... XR_001784140.1 15.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1887
ORF length:
1818
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GCTTCACACG GCCATATCAT GCTGGCAGCC ATTCCTGGGT CTGGCTGTGG
121TGTTAATCTT CATGGGATCC ACCATTGGCT GCCCCGCTCG CTGTGAGTGC TCTGCCCAGA
181ACAAATCTGT TAGCTGTCAC AGAAGGCGAT TGATCGCCAT CCCAGAGGGC ATTCCCATCG
241AAACCAAAAT CTTGGACCTC AGTAAAAACA GGCTAAAAAG CGTCAACCCT GAAGAATTCA
301TATCATATCC TCTGCTGGAA GAGATAGACT TGAGTGACAA CATCATTGCC AATGTGGAAC
361CAGGAGCATT CAACAATCTG TTTAACCTGC GTTCCCTCCG CCTAAAAGGC AATCGTCTAA
421AGCTGGTCCC TTTGGGAGTA TTCACGGGGC TGTCCAATCT CACTAAGCTT GACATTAGTG
481AGAATAAGAT TGTCATTTTA CTAGACTACA TGTTCCAAGA TCTACATAAC CTGAAGTCTC
541TAGAAGTGGG GGACAATGAT TTGGTTTATA TATCACACAG GGCATTCAGT GGGCTTCTTA
601GCTTGGAGCA GCTCACCCTG GAGAAATGCA ACTTAACAGC AGTACCAACA GAAGCCCTCT
661CCCACCTCCG CAGCCTCATC AGCCTGCATC TGAAGCATCT CAATATCAAC AATATGCCTG
721TGTATGCCTT TAAAAGATTG TTCCACCTGA AACACCTAGA GATTGACTAT TGGCCTTTAC
781TGGATATGAT GCCTGCCAAT AGCCTCTACG GTCTCAACCT CACATCCCTT TCAGTCACCA
841ACACCAATCT GTCTACTGTA CCCTTCCTTG CCTTTAAACA CCTGGTATAC CTGACTCACC
901TTAACCTCTC CTACAATCCC ATCAGCACTA TTGAAGCAGG CATGTTCTCT GACCTGATCC
961GCCTTCAGGA GCTTCATATA GTGGGGGCCC AGCTTCGCAC CATTGAGCCT CACTCCTTCC
1021AAGGGCTCCG CTTCCTACGC GTGCTCAATG TGTCTCAGAA CCTGCTGGAA ACTTTGGAAG
1081AGAATGTCTT CTCCTCCCCT AGGGCTCTGG AGGTCTTGAG CATTAACAAC AACCCTCTGG
1141CCTGTGACTG CCGCCTTCTC TGGATCTTGC AGCGACAGCC CACCCTGCAG TTTGGTGGCC
1201AGCAACCTAT GTGTGCTGGC CCAGACACCA TCCGTGAGAG GTCTTTCAAG GATTTCCATA
1261GCACTGCCCT TTCTTTTTAC TTTACCTGCA AAAAACCCAA AATCCGTGAA AAGAAGTTGC
1321AGCATCTGCT AGTAGATGAA GGGCAGACAG TCCAGCTAGA ATGCAGTGCA GATGGAGACC
1381CGCAGCCTGT GATTTCCTGG GTGACACCCC GAAGGCGTTT CATCACCACC AAGTCCAATG
1441GAAGAGCCAC CGTGTTGGGT GATGGCACCT TGGAAATCCG CTTTGCCCAG GATCAAGACA
1501GCGGGATGTA TGTTTGCATC GCTAGCAATG CTGCTGGGAA TGATACCTTC ACAGCCTCCT
1561TAACTGTGAA AGGATTCGCT TCAGATCGTT TTCTTTATGC GAACAGGACC CCTATGTACA
1621TGACCGACTC CAATGACACC ATTTCCAATG GCACCAATGC CAATACTTTT TCCCTGGACC
1681TTAAAACAAT ACTGGTGTCT ACAGCTATGG GCTGCTTCAC ATTCCTGGGA GTGGTTTTAT
1741TTTGTTTTCT TCTCCTTTTT GTGTGGAGCC GAGGGAAAGG CAAGCACAAA AACAGCATTG
1801ACCTTGAGTA TGTGCCCAGA AAAAACAATG GTGCTGTTGT GGAAGGGGAG GTAGCTGGAC
1861CCAGGAGGTT CAACATGAAA ATGATTTTGC CAACTTTCTT GTACAAAGTT GGcattataa
1921gaaagcattg cttatcaatt tgttgcaacg aac

Download FASTA (ORF) (Full)