Construct: ORF ccsbBroadEn_09732

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006325.1_s300c1, BRDN0000398171
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SLC5A8 (160728)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 160728 SLC5A8 solute carrier family 5 mem... NM_145913.5 99.9% 100% 1662C>T
2 human 160728 SLC5A8 solute carrier family 5 mem... XM_017018910.2 72.5% 72.2% (many diffs)
3 human 160728 SLC5A8 solute carrier family 5 mem... XR_944503.3 59.6% (many diffs)
4 mouse 216225 Slc5a8 solute carrier family 5 (io... NM_145423.2 86% 86.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1899
ORF length:
1830
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGACACGCCA CGGGGCATCG GCACCTTCGT GGTGTGGGAC TACGTGGTGT
121TCGCGGGCAT GCTGGTCATC TCGGCCGCCA TCGGCATCTA CTACGCCTTC GCTGGGGGCG
181GCCAGCAGAC CTCCAAGGAC TTCCTGATGG GCGGCCGCAG AATGACCGCA GTGCCCGTGG
241CGCTGTCCCT CACCGCTAGC TTCATGTCAG CCGTCACTGT CCTGGGCACC CCCTCCGAGG
301TCTACCGTTT TGGGGCCATT TTTAGCATCT TTGCCTTCAC CTACTTCTTT GTGGTGGTCA
361TCAGCGCGGA GGTCTTCCTC CCGGTGTTCT ACAAACTGGG AATTACCAGC ACCTACGAGT
421ATTTAGAACT TCGATTTAAC AAATGTGTTC GTCTCTGTGG AACAGTCCTC TTCATTGTTC
481AAACAATTCT GTATACTGGA ATTGTTATTT ATGCCCCTGC CCTGGCTTTG AATCAAGTCA
541CAGGATTTGA TCTGTGGGGC GCGGTAGTGG CAACGGGGGT GGTCTGCACA TTCTACTGCA
601CACTGGGTGG TCTTAAAGCA GTTATCTGGA CAGATGTTTT TCAAGTTGGG ATCATGGTGG
661CTGGATTTGC ATCCGTGATT ATACAGGCTG TGGTGATGCA AGGTGGAATC AGCACTATTT
721TAAATGATGC CTATGATGGT GGAAGATTAA ATTTCTGGAA TTTTAATCCT AACCCTTTGC
781AAAGACACAC CTTCTGGACA ATTATTATAG GAGGGACCTT CACATGGACC AGCATCTACG
841GTGTCAACCA ATCCCAGGTG CAGAGATATA TTTCTTGTAA AAGCAGATTC CAGGCAAAAC
901TGTCTCTCTA CATCAATCTT GTGGGACTCT GGGCAATCCT CACATGCTCA GTGTTTTGTG
961GGCTCGCCCT ATATTCCAGG TACCATGACT GTGATCCTTG GACAGCCAAG AAAGTGTCTG
1021CACCAGACCA GCTCATGCCT TATTTGGTAC TGGACATTCT GCAAGATTAT CCAGGACTTC
1081CTGGACTTTT TGTGGCCTGT GCTTACAGTG GGACATTAAG CACAGTGTCC TCCAGTATTA
1141ATGCCTTAGC AGCAGTAACT GTGGAAGATC TAATCAAACC TTACTTCAGA TCGCTCTCAG
1201AAAGGTCTCT GTCTTGGATT TCCCAAGGAA TGAGTGTGGT GTATGGAGCC CTGTGTATTG
1261GAATGGCTGC GCTGGCGTCA CTTATGGGAG CTTTGTTGCA GGCAGCACTC AGCGTATTTG
1321GTATGGTTGG TGGACCACTT ATGGGCCTGT TCGCTTTGGG CATTTTGGTT CCCTTTGCCA
1381ACTCAATTGG AGCACTTGTT GGTCTGATGG CTGGATTTGC CATTTCTCTA TGGGTTGGAA
1441TTGGAGCTCA AATATATCCT CCACTTCCTG AGAGAACATT GCCATTGCAC CTTGATATCC
1501AAGGCTGTAA CAGCACCTAC AATGAGACAA ATTTGATGAC AACCACAGAA ATGCCATTTA
1561CTACTAGTGT TTTTCAAATA TACAATGTTC AAAGGACTCC ACTGATGGAT AACTGGTATT
1621CTTTATCATA TCTGTACTTC AGCACTGTTG GAACTTTGGT AACATTATTA GTGGGGATAC
1681TTGTCAGTTT ATCAACAGGA GGAAGAAAAC AGAACTTAGA CCCCAGATAT ATACTAACCA
1741AAGAGGACTT TTTATCCAAT TTTGATATTT TTAAGAAAAA GAAGCATGTT TTGAGCTATA
1801AATCACATCC AGTGGAAGAT GGTGGAACTG ATAATCCTGC TTTCAACCAC ATTGAATTGA
1861ACTCAGATCA GAGTGGCAAG AGCAATGGGA CTCGTTTGTT GCCAACTTTC TTGTACAAAG
1921Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac

Download FASTA (ORF) (Full)

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