Construct: ORF ccsbBroadEn_09864

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016176.1_s300c1, BRDN0000398119
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SLC39A12 (221074)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 221074 SLC39A12 solute carrier family 39 me... NM_001145195.2 99.9% 100% 99T>C
2 human 221074 SLC39A12 solute carrier family 39 me... NM_001282733.1 99.8% 99.8% 99T>C;1420_1421insAGC
3 human 221074 SLC39A12 solute carrier family 39 me... NM_152725.3 94.5% 94.6% 99T>C;1421_1422ins111
4 human 221074 SLC39A12 solute carrier family 39 me... NM_001282734.1 80.6% 80.6% 0_1ins402
5 mouse 277468 Slc39a12 solute carrier family 39 (z... XM_017318950.1 38.1% 38.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2142
ORF length:
2073
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GTGCTTCCGG ACAAAGCTCT CAGTATCCTG GGTGCCATTG TTTCTTCTAC
121TCAGCCGTGT TTTTTCTACT GAGACAGACA AACCCTCAGC CCAGGACAGC AGAAGCCGTG
181GGAGTTCAGG CCAACCGGCA GACCTGCTAC AGGTTCTCTC TGCTGGTGAC CACCCACCCC
241ACAACCACTC AAGAAGCCTC ATCAAAACAT TGTTGGAGAA AACTGGGTGC CCACGGAGGA
301GAAACGGAAT GCAAGGAGAT TGCAATCTGT GCTTTGAACC AGATGCACTA TTACTAATAG
361CTGGAGGAAA TTTTGAAGAT CAGCTTAGAG AAGAAGTGGT CCAGAGAGTT TCTCTTCTCC
421TTCTCTATTA CATTATTCAT CAGGAAGAGA TCTGTTCTTC AAAGCTCAAC ATGAGTAATA
481AAGAGTATAA ATTTTACCTA CACAGCCTAC TGAGCCTCAG GCAGGATGAA GATTCCTCTT
541TCCTTTCACA GAATGAGACA GAAGATATCT TGGCTTTCAC CAGGCAGTAC TTTGACACTT
601CTCAAAGCCA GTGTATGGAA ACCAAAACGC TGCAGAAAAA ATCTGGAATA GTGAGCAGTG
661AAGGTGCTAA TGAAAGTACG CTTCCTCAGT TGGCAGCCAT GATCATTACT TTGTCCCTCC
721AGGGTGTTTG TCTGGGACAA GGAAACTTGC CTTCCCCAGA CTACTTTACA GAATATATTT
781TCAGTTCCTT GAATCGTACG AATACCCTCC GCCTATCAGA ACTAGACCAA CTCCTCAACA
841CTCTCTGGAC CAGAAGTACT TGTATCAAAA ATGAGAAAAT CCATCAATTT CAAAGGAAAC
901AAAACAACAT AATAACCCAT GATCAGGACT ATTCTAATTT CTCTTCATCC ATGGAAAAAG
961AGTCTGAGGA TGGTCCAGTT TCCTGGGATC AGACCTGCTT CTCTGCTAGG CAGCTGGTGG
1021AGATATTTCT ACAGAAGGGC CTCTCACTCA TTTCTAAGGA GGACTTTAAG CAAATGAGTC
1081CAGGGATCAT CCAGCAGCTC CTCAGCTGCT CCTGCCACTT ACCCAAGGAC CAACAAGCAA
1141AGCTGCCACC TACCACTCTG GAGAAATACG GCTACAGCAC GGTGGCTGTC ACCCTTCTCA
1201CACTGGGCTC CATGCTGGGG ACAGCGCTGG TCCTTTTCCA TAGCTGTGAG GAGAACTACA
1261GGCTTATCTT ACAGCTGTTT GTGGGCTTGG CCGTCGGGAC ACTGTCTGGG GACGCTCTGC
1321TCCACCTTAT CCCTCAGGTT CTTGGTTTAC ATAAGCAGGA AGCCCCAGAA TTTGGGCATT
1381TCCATGAAAG CAAAGGTCAT ATTTGGAAAC TGATGGGATT AATTGGAGGC ATCCATGGAT
1441TTTTCTTGAT AGAAAAATGT TTTATTCTTC TTGTATCACC AAATGACAAG CAGGGCCTGT
1501CATTGGTTAA TGGGCACGTG GGTCATTCCC ACCATCTTGC ACTCAACTCT GAATTAAGTG
1561ACCAGGCAGG CAGAGGCAAA TCTGCTTCAA CTATCCAGTT GAAAAGCCCA GAAGATTCAC
1621AGGCAGCTGA AATGCCTATA GGCAGTATGA CAGCCTCCAA CAGAAAATGT AAAGCCATTA
1681GCTTGTTAGC AATCATGATT CTGGTTGGGG ACAGCCTGCA TAATTTTGCA GATGGCCTAG
1741CCATAGGAGC AGCCTTCTCA TCATCATCCG AGTCAGGAGT GACCACTACG ATTGCTATCT
1801TGTGTCATGA AATCCCACAT GAAATGGGAG ACTTTGCCGT GCTCTTAAGC TCTGGACTTT
1861CTATGAAGAC TGCCATCCTG ATGAATTTTA TAAGCTCCCT AACTGCCTTC ATGGGATTAT
1921ACATTGGCCT TTCCGTGTCA GCTGATCCAT GTGTTCAAGA CTGGATCTTC ACAGTCACTG
1981CTGGGATGTT CTTATATTTA TCCTTGGTTG AAATGCTTCC TGAAATGACT CATGTTCAAA
2041CACAACGACC CTGGATGATG TTTCTCCTGC AAAACTTTGG ATTGATCCTA GGTTGGCTTT
2101CTCTCCTGCT CTTGGCTATA TATGAGCAAA ATATTAAAAT ATTGCCAACT TTCTTGTACA
2161AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac

Download FASTA (ORF) (Full)

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