Construct: ORF ccsbBroadEn_09869

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003362.1_s300c1, BRDN0000398112
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SPATA13 (221178)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 221178 SPATA13 spermatogenesis associated 13 NM_153023.4 99.9% 99.8% 844C>N
2 human 221178 SPATA13 spermatogenesis associated 13 NM_001286794.1 87.1% 83% (many diffs)
3 human 221178 SPATA13 spermatogenesis associated 13 NM_001286795.2 85.9% 85.1% (many diffs)
4 human 221178 SPATA13 spermatogenesis associated 13 NM_001286793.2 76.5% 75.6% (many diffs)
5 human 221178 SPATA13 spermatogenesis associated 13 NM_001166271.3 51% 50.9% 1_1875del;2719C>N
6 human 221178 SPATA13 spermatogenesis associated 13 NM_001286792.2 48.6% 48.6% 1_2061del;2905C>N
7 mouse 219140 Spata13 spermatogenesis associated 13 NM_001310594.1 75.5% 76.1% (many diffs)
8 mouse 219140 Spata13 spermatogenesis associated 13 XM_006518870.2 75% 75.6% (many diffs)
9 mouse 219140 Spata13 spermatogenesis associated 13 XM_017315975.1 74.3% 76.2% (many diffs)
10 mouse 219140 Spata13 spermatogenesis associated 13 XM_011245027.1 49.2% 48.8% (many diffs)
11 mouse 219140 Spata13 spermatogenesis associated 13 NM_001033272.2 45.1% 45.5% (many diffs)
12 mouse 219140 Spata13 spermatogenesis associated 13 XM_011245026.1 45.1% 45.5% (many diffs)
13 mouse 219140 Spata13 spermatogenesis associated 13 XM_017315973.1 45.1% 45.5% (many diffs)
14 mouse 219140 Spata13 spermatogenesis associated 13 XM_011245025.1 44.7% 45.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2025
ORF length:
1956
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GACTTCTGCC AGCCCTGAAG ACCAGAATGC TCCAGTGGGC TGCCCCAAAG
121GAGCCCGGAG AAGGCGCCCC ATTTCCGTGA TAGGTGGGGT CAGCTTGTAT GGGACCAACC
181AGACGGAGGA ACTGGACAAT CTTCTGACCC AACCGGCTTC CAGGCCGCCC ATGCCTGCTC
241ACCAGGTGCC ACCCTACAAG GCTGTGTCGG CCCGGTTCCG GCCCTTCACA TTCTCCCAGA
301GCACCCCCAT TGGGTTGGAC CGTGTGGGAC GCCGGCGGCA GATGAGAGCA TCCAACGTTT
361CTTCAGATGG AGGTACTGAG CCCTCTGCCT TAGTGGATGA CAACGGTAGT GAGGAGGACT
421TCAGCTATGA AGACCTCTGC CAGGCCAGCC CTCGGTACCT GCAGCCCGGC GGGGAGCAGC
481TGGCCATCAA TGAGCTGATC AGTGATGGCA ACGTGGTCTG CGCAGAAGCC CTGTGGGACC
541ATGTGACCAT GGATGACCAG GAACTGGGCT TCAAAGCCGG GGATGTCATC CAGGTTCTGG
601AAGCCTCCAA CAAGGACTGG TGGTGGGGCC GCAGTGAAGA TAAGGAAGCC TGGTTCCCCG
661CGAGCTTCGT CAGATTGCGA GTGAATCAGG AAGAGCTGTC GGAAAACTCC AGCAGCACCC
721CCAGTGAGGA GCAGGACGAG GAGGCCAGCC AGAGCCGCCA CAGACACTGT GAGAACAAGC
781AGCAGATGCG GACCAACGTC ATCCGGGAGA TCATGGACAC CGAGCGGGTG TACATCAAAC
841ACCTCAGGGA CATCTGTGAG GGCTATATCC GACAGTGCCG CAAGCACACA GGAATGTTCA
901CCGTTGCGCA GNTAGCCACT ATTTTTGGAA ACATTGAAGA TATTTACAAA TTCCAAAGAA
961AGTTTCTGAA AGACCTTGAG AAACAGTACA ACAAAGAGGA ACCTCACTTA AGTGAAATAG
1021GATCTTGCTT TCTTCAAAAT CAAGAGGGCT TTGCCATCTA TTCCGAGTAC TGCAACAACC
1081ACCCGGGCGC CTGCCTGGAG CTCGCCAACC TCATGAAGCA GGGCAAGTAC AGACATTTCT
1141TTGAAGCCTG CCGCCTGCTG CAGCAGATGA TTGACATCGC CATCGACGGG TTCCTGCTCA
1201CACCAGTGCA GAAGATCTGC AAATACCCGC TGCAGCTGGC CGAGCTGCTC AAGTATACCA
1261CACAGGAACA CGGTGATTAC AGCAACATAA AGGCAGCATA TGAGGCCATG AAGAATGTGG
1321CCTGTCTGAT CAACGAGCGC AAGCGCAAGC TGGAGAGCAT CGACAAGATA GCTCGCTGGC
1381AGGTGTCTAT CGTGGGCTGG GAGGGACTGG ATATCTTAGA CCGAAGCTCA GAATTGATTC
1441ATTCTGGGGA GCTGACCAAA ATCACTAAGC AAGGCAAAAG CCAGCAGCGG ACGTTCTTCC
1501TGTTTGACCA CCAGCTGGTG TCCTGCAAGA AGGACCTGCT GCGCAGGGAC ATGCTGTACT
1561ACAAGGGCCG GCTGGACATG GATGAGATGG AGCTTGTGGA CCTGGGGGAT GGGCGCGACA
1621AGGACTGCAA CCTCAGCGTG AAAAATGCCT TCAAGCTCGT CAGTAGGACC ACAGACGAGG
1681TTTATTTGTT TTGTGCCAAA AAACAAGAAG ACAAGGCGAG GTGGCTGCAG GCCTGTGCAG
1741ATGAAAGGAG GCGGGTGCAA GAGGACAAGG AGATGGGAAT GGAAATTTCA GAAAACCAGA
1801AGAAACTTGC CATGTTAAAT GCTCAAAAGG CAGGACATGG AAAGTCAAAA GGCTACAACA
1861GGTGCCCTGT GGCCCCACCG CACCAGGGCC TGCACCCCAT CCACCAGCGC CACATCACTA
1921TGCCCACAAG CGTCCCCCAG CAGCAGGTCT TTGGCCTGGC GGAACCCAAG AGGAAGTCCT
1981CGCTCTTCTG GCACACCTTC AACAGGCTCA CCCCCTTCCG GAAATTGCCA ACTTTCTTGT
2041ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)