Construct: ORF ccsbBroadEn_09879
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018534.1_s300c1, BRDN0000394423
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CDHR3 (222256)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 222256 | CDHR3 | cadherin related family mem... | NM_152750.5 | 99.9% | 100% | 348G>T |
| 2 | human | 222256 | CDHR3 | cadherin related family mem... | NM_001301161.2 | 90% | 90% | 0_1ins264;84G>T |
| 3 | human | 222256 | CDHR3 | cadherin related family mem... | XM_005250224.5 | 90% | 90% | 0_1ins264;84G>T |
| 4 | human | 222256 | CDHR3 | cadherin related family mem... | XM_011515955.2 | 87.1% | 84.7% | 348G>T;2258_2259insGACAAAGAAAGGAG;2316_2317ins325 |
| 5 | human | 222256 | CDHR3 | cadherin related family mem... | XM_006715905.2 | 84.9% | 84.9% | 348G>T;1425_1426ins399 |
| 6 | human | 222256 | CDHR3 | cadherin related family mem... | XM_017011862.1 | 83% | 86.6% | 348G>T;2269_2416del;2478_2479ins325 |
| 7 | human | 222256 | CDHR3 | cadherin related family mem... | XM_011515956.2 | 79.4% | 79.4% | 0_1ins546 |
| 8 | human | 222256 | CDHR3 | cadherin related family mem... | XM_017011863.2 | 79.4% | 79.4% | 0_1ins546 |
| 9 | human | 222256 | CDHR3 | cadherin related family mem... | XM_017011864.1 | 79.4% | 79.4% | 0_1ins546 |
| 10 | human | 222256 | CDHR3 | cadherin related family mem... | XM_005250225.2 | 78.2% | 66.9% | 348G>T;1824_1825ins251;2079_2080ins325 |
| 11 | human | 222256 | CDHR3 | cadherin related family mem... | XM_011515957.2 | 77.2% | 66% | (many diffs) |
| 12 | human | 222256 | CDHR3 | cadherin related family mem... | XM_017011865.2 | 74.9% | 75% | 0_1ins264;84G>T;1161_1162ins399 |
| 13 | human | 222256 | CDHR3 | cadherin related family mem... | XR_927414.2 | 73.3% | (many diffs) | |
| 14 | human | 222256 | CDHR3 | cadherin related family mem... | XM_017011866.2 | 68% | 68% | 0_1ins849 |
| 15 | human | 222256 | CDHR3 | cadherin related family mem... | XM_017011867.2 | 64.4% | 64.4% | 0_1ins546;879_880ins399 |
| 16 | human | 222256 | CDHR3 | cadherin related family mem... | XM_011515958.2 | 63.2% | 54.7% | 348G>T;1425_1426ins650;1680_1681ins325 |
| 17 | human | 222256 | CDHR3 | cadherin related family mem... | XM_011515959.2 | 60.2% | 60.2% | 0_1ins1056 |
| 18 | human | 222256 | CDHR3 | cadherin related family mem... | XM_024446689.1 | 60.2% | 60.2% | 0_1ins1056 |
| 19 | human | 222256 | CDHR3 | cadherin related family mem... | XR_001744604.2 | 58.7% | (many diffs) | |
| 20 | human | 222256 | CDHR3 | cadherin related family mem... | XM_024446690.1 | 52.9% | 52.9% | 0_1ins849;576_577ins399 |
| 21 | human | 222256 | CDHR3 | cadherin related family mem... | XR_001744602.1 | 40.9% | (many diffs) | |
| 22 | human | 222256 | CDHR3 | cadherin related family mem... | XR_001744598.1 | 40.4% | (many diffs) | |
| 23 | human | 222256 | CDHR3 | cadherin related family mem... | XR_001744605.2 | 37.5% | (many diffs) | |
| 24 | human | 222256 | CDHR3 | cadherin related family mem... | XR_001744603.2 | 37% | (many diffs) | |
| 25 | human | 222256 | CDHR3 | cadherin related family mem... | XR_001744601.2 | 36.5% | (many diffs) | |
| 26 | human | 222256 | CDHR3 | cadherin related family mem... | XR_001744606.2 | 35% | (many diffs) | |
| 27 | human | 222256 | CDHR3 | cadherin related family mem... | XR_001744600.2 | 34.6% | (many diffs) | |
| 28 | human | 222256 | CDHR3 | cadherin related family mem... | XR_001744607.2 | 33.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2724
- ORF length:
- 2655
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GCAGGAAGCA ATCATTCTCC TGGCTCTCCT GGGTGCCATG TCAGGGGGAG 121 AAGCACTACA CCTAATCCTC TTACCTGCTA CAGGCAATGT GGCAGAGAAT TCTCCACCTG 181 GGACTTCAGT GCACAAGTTT TCTGTGAAGT TATCAGCATC ATTGTCACCT GTGATCCCAG 241 GATTTCCCCA GATAGTCAAC TCAAATCCCC TCACTGAAGC TTTTAGGGTG AATTGGCTGT 301 CAGGCACCTA CTTTGAGGTT GTCACCACTG GGATGGAACA ACTAGATTTT GAAACAGGAC 361 CAAACATATT TGATTTGCAG ATTTATGTGA AGGATGAGGT TGGTGTCACA GACCTTCAAG 421 TCCTGACTGT CCAGGTAACA GATGTGAACG AGCCACCTCA GTTTCAAGGC AACTTGGCAG 481 AAGGTCTACA CCTCTACATA GTAGAAAGAG CAAACCCTGG ATTCATTTAC CAGGTTGAGG 541 CCTTCGATCC AGAAGACACA AGCCGAAACA TTCCCCTCAG TTATTTCCTG ATTTCTCCCC 601 CAAAGAGCTT CAGAATGTCT GCTAATGGCA CCCTCTTCTC CACAACAGAA TTGGACTTTG 661 AAGCAGGACA CAGAAGTTTC CATCTCATCG TGGAGGTGAG GGACAGTGGA GGCCTCAAAG 721 CCTCCACAGA GCTCCAGGTG AACATCGTGA ACCTCAACGA CGAAGTCCCT CGCTTTACCA 781 GCCCGACACG AGTGTACACA GTCCTGGAGG AACTGAGTCC AGGAACCATC GTGGCCAATA 841 TCACAGCGGA GGATCCTGAT GATGAAGGTT TTCCCAGCCA CCTCCTCTAC AGCATTACCA 901 CTGTTAGCAA ATATTTCATG ATAAATCAGT TGACTGGTAC AATCCAAGTG GCCCAAAGGA 961 TAGACCGAGA TGCAGGTGAA TTGAGACAAA ATCCCACCAT TTCCCTGGAA GTTCTAGTGA 1021 AGGACAGACC ATATGGGGGT CAGGAGAATC GCATCCAGAT AACCTTCATT GTGGAAGACG 1081 TCAACGACAA TCCTGCCACA TGCCAAAAGT TCACCTTCAG CATTATGGTG CCGGAAAGAA 1141 CAGCCAAGGG GACGTTGCTT CTTGACCTAA ACAAGTTCTG CTTTGATGAT GACAGTGAGG 1201 CACCAAACAA CAGATTCAAC TTCACCATGC CATCTGGAGT GGGGAGCGGC AGCAGATTTT 1261 TACAGGATCC AGCTGGCTCT GGGAAGATTG TGCTGATTGG TGATCTAGAC TACGAAAATC 1321 CAAGTAACCT AGCAGCCGGC AATAAATATA CGGTGATAAT CCAGGTGCAG GATGTGGCCC 1381 CCCCTTACTA TAAAAATAAC GTCTACGTTT ATATCCTAAC AAGCCCAGAA AATGAGTTTC 1441 CTCTCATTTT TGATAGGCCA TCCTATGTAT TTGATGTGTC AGAAAGAAGG CCCGCCAGAA 1501 CCCGAGTGGG ACAGGTGCGA GCCACTGATA AAGACCTCCC CCAGAGCAGC CTCCTGTACT 1561 CCATCTCCAC TGGAGGGGCC AGCCTCCAGT ATCCAAATGT ATTTTGGATT AATCCCAAGA 1621 CAGGAGAACT CCAGCTGGTA ACTAAAGTGG ACTGTGAAAC AACCCCCATC TATATTCTCA 1681 GAATCCAGGC CACCAACAAC GAAGACACAA GCTCTGTCAC TGTTACTGTG AACATCCTTG 1741 AAGAAAATGA TGAAAAGCCA ATTTGTACTC CAAACTCTTA TTTCCTGGCC CTCCCAGTGG 1801 ATCTGAAAGT TGGCACAAAT ATTCAGAATT TCAAGCTGAC ATGTACCGAC CTTGATTCCA 1861 GCCCCAGATC TTTCCGTTAT TCCATTGGCC CAGGTAACGT CAACAATCAT TTCACCTTCT 1921 CTCCCAATGC TGGTTCCAAT GTCACACGCC TGCTGCTTAC ATCTCGCTTT GACTATGCTG 1981 GTGGGTTTGA TAAGATCTGG GACTACAAGC TACTTGTCTA CGTAACTGAT GACAACTTGA 2041 TGTCTGACAG GAAGAAAGCG GAGGCTCTTG TTGAGACAGG AACAGTGACA CTGAGTATTA 2101 AAGTCATTCC CCACCCAACC ACTATCATCA CCACGACCCC CAGGCCCAGG GTCACCTATC 2161 AGGTCCTGAG GAAAAACGTT TACTCTCCAT CTGCATGGTA CGTGCCGTTT GTCATCACTT 2221 TGGGCTCCAT ATTGCTTCTG GGTCTCCTCG TGTACCTGGT CGTCCTATTG GCCAAAGCCA 2281 TCCACAGACA CTGCCCCTGC AAGACTGGGA AGAACAAGGA ACCTCTGACA AAGAAAGGAG 2341 AAACGAAGAC TGCAGAGAGA GACGTCGTGG TGGAAACTAT CCAGATGAAC ACTATCTTTG 2401 ATGGAGAAGC CATAGATCCA GTGACCGGGG AAACATATGA ATTCAACTCA AAAACTGGAG 2461 CCAGAAAGTG GAAAGATCCA CTAACCCAAA TGCCAAAATG GAAAGAGTCC AGCCACCAGG 2521 GAGCTGCCCC ACGCAGAGTC ACTGCTGGGG AAGGGATGGG GTCACTGAGA AGTGCCAACT 2581 GGGAAGAAGA TGAGCTGAGT GGCAAAGCGT GGGCTGAGGA TGCTGGTCTG GGTTCCAGAA 2641 ATGAGGGTGG CAAGCTGGGC AACCCAAAGA ACAGAAATCC AGCCTTCATG AACAGGGCTT 2701 ACCCCAAACC ACACCCAGGA AAGTTGCCAA CTTTCTTGTA CAAAGTtggc attataagaa 2761 agcattgctt atcaatttgt tgcaacgaac