Transcript: Human XR_001744602.1

PREDICTED: Homo sapiens cadherin related family member 3 (CDHR3), transcript variant X20, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
CDHR3 (222256)
Length:
6485
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001744602.1
NBCI Gene record:
CDHR3 (222256)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001744602.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000416129 TAACCTAGCAGCCGGCAATAA pLKO_005 1333 3UTR 100% 13.200 18.480 N CDHR3 n/a
2 TRCN0000435988 ACGACGAAGTCCCTCGCTTTA pLKO_005 765 3UTR 100% 10.800 15.120 N CDHR3 n/a
3 TRCN0000418477 CGTGTACCTGGTCGTCCTATT pLKO_005 2274 3UTR 100% 10.800 15.120 N CDHR3 n/a
4 TRCN0000055891 CCAGGTAACGTCAACAATCAT pLKO.1 1915 3UTR 100% 5.625 7.875 N CDHR3 n/a
5 TRCN0000422892 TTGTACTCCAAACTCTTATTT pLKO_005 1788 3UTR 100% 15.000 12.000 N CDHR3 n/a
6 TRCN0000055890 CCCTCAGTTATTTCCTGATTT pLKO.1 582 3UTR 100% 13.200 9.240 N CDHR3 n/a
7 TRCN0000431181 TCCAGATGAACACTATCTTTG pLKO_005 2405 3UTR 100% 10.800 7.560 N CDHR3 n/a
8 TRCN0000055888 CGCATCCAGATAACCTTCATT pLKO.1 1058 3UTR 100% 5.625 3.938 N CDHR3 n/a
9 TRCN0000055889 CGTGCCGTTTGTCATCACTTT pLKO.1 2226 3UTR 100% 4.950 3.465 N CDHR3 n/a
10 TRCN0000055892 GACCTAAACAAGTTCTGCTTT pLKO.1 1172 3UTR 100% 4.950 3.465 N CDHR3 n/a
11 TRCN0000166201 CATGGTGAAACCCTGTCTCTA pLKO.1 4947 3UTR 100% 4.950 2.475 Y ORAI2 n/a
12 TRCN0000179120 CAACATGGTGAAACCCTGTTT pLKO.1 4944 3UTR 100% 4.950 2.475 Y LOC339059 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001744602.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_09879 pDONR223 100% 40.9% None (many diffs) n/a
2 ccsbBroad304_09879 pLX_304 0% 40.9% V5 (many diffs) n/a
3 TRCN0000467304 CCATAACCTGAGTTTTTTTGTAAA pLX_317 15.3% 40.9% V5 (many diffs) n/a
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