Construct: ORF ccsbBroadEn_09880

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000555.1_s300c1, BRDN0000456049
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
HS3ST5 (222537)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 222537 HS3ST5 heparan sulfate-glucosamine... NM_153612.3 99.9% 100% 492G>A
2 human 222537 HS3ST5 heparan sulfate-glucosamine... XM_006715379.2 99.9% 100% 492G>A
3 human 222537 HS3ST5 heparan sulfate-glucosamine... XM_011535588.2 99.9% 100% 492G>A
4 human 222537 HS3ST5 heparan sulfate-glucosamine... XM_017010470.1 99.9% 100% 492G>A
5 human 222537 HS3ST5 heparan sulfate-glucosamine... XM_017010471.1 99.9% 100% 492G>A
6 human 222537 HS3ST5 heparan sulfate-glucosamine... XM_017010472.1 99.9% 100% 492G>A
7 human 222537 HS3ST5 heparan sulfate-glucosamine... XM_017010473.1 99.9% 100% 492G>A
8 human 222537 HS3ST5 heparan sulfate-glucosamine... XM_017010474.2 99.9% 100% 492G>A
9 mouse 319415 Hs3st5 heparan sulfate (glucosamin... NM_001081208.2 90% 96.8% (many diffs)
10 mouse 319415 Hs3st5 heparan sulfate (glucosamin... NM_001253355.1 90% 96.8% (many diffs)
11 mouse 319415 Hs3st5 heparan sulfate (glucosamin... NM_001253356.1 90% 96.8% (many diffs)
12 mouse 319415 Hs3st5 heparan sulfate (glucosamin... XM_006512761.2 90% 96.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1107
ORF length:
1038
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GCTATTCAAA CAGCAGGCGT GGCTGAGACA GAAGCTCCTG GTGCTGGGAA
121GCCTTGCCGT TGGGAGTCTC CTGTATCTAG TCGCCAGAGT TGGGAGCTTG GATAGGCTAC
181AACCCATTTG CCCCATTGAA GGTCGACTGG GTGGAGCCCG CACTCAGGCT GAATTCCCAC
241TTCGCGCCCT GCAGTTTAAG CGTGGCCTGC TGCACGAGTT CCGGAAGGGC AACGCTTCCA
301AGGAGCAGGT TCGCCTCCAT GACCTGGTCC AGCAGCTCCC CAAGGCCATT ATCATTGGGG
361TGAGGAAAGG AGGCACAAGG GCCCTGCTTG AAATGCTGAA CCTACATCCG GCAGTAGTCA
421AAGCCTCTCA AGAAATCCAC TTTTTTGATA ATGATGAGAA TTATGGTAAG GGCATTGAGT
481GGTATAGGAA AAAGATGCCT TTTTCCTACC CTCAGCAAAT CACAATTGAA AAGAGCCCAG
541CATATTTTAT CACAGAGGAA GTTCCAGAAA GGATTTACAA AATGAACTCA TCCATCAAGT
601TGTTGATCAT TGTCAGGGAG CCAACCACAA GAGCTATTTC TGATTATACT CAGGTGCTAG
661AGGGGAAGGA GAGGAAGAAC AAAACTTATT ACAAGTTTGA GAAGCTGGCC ATAGACCCTA
721ATACATGCGA AGTGAACACA AAATACAAAG CAGTAAGAAC CAGCATCTAC ACCAAACATC
781TGGAAAGGTG GTTGAAATAC TTTCCAATTG AGCAATTTCA TGTCGTCGAT GGAGATCGCC
841TCATCACGGA ACCTCTGCCA GAACTTCAGC TCGTGGAGAA GTTCCTAAAT CTGCCTCCAA
901GGATAAGTCA ATACAATTTA TACTTCAATG CTACCAGAGG GTTTTACTGC TTGCGGTTTA
961ATATTATCTT TAATAAGTGC CTGGCGGGCA GCAAGGGGCG CATTCATCCA GAGGTGGACC
1021CCTCTGTCAT TACTAAATTG CGCAAATTCT TTCATCCTTT TAATCAAAAA TTTTACCAGA
1081TCACTGGGAG GACATTGAAC TGGCCCTTGC CAACTTTCTT GTACAAAGTT GGcattataa
1141gaaagcattg cttatcaatt tgttgcaacg aac

Download FASTA (ORF) (Full)