Construct: ORF ccsbBroadEn_09951
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006511.1_s300c1, BRDN0000393732
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- C17orf47 (284083)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 5414 | SEPTIN4 | septin 4 | NM_001038704.4 | 99.8% | 99.8% | 189A>G;262C>A |
| 2 | human | 5414 | SEPTIN4 | septin 4 | XM_011524637.2 | 96% | 94.7% | (many diffs) |
| 3 | human | 5414 | SEPTIN4 | septin 4 | XM_017024498.2 | 90.4% | 90% | (many diffs) |
| 4 | human | 5414 | SEPTIN4 | septin 4 | NM_001368771.2 | 55.3% | 52.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1776
- ORF length:
- 1710
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGT CAAGACAAAT AAACCTGGGG CCAAGGTAGC GGTTTCAGCA CAGAGAGGGT 121 CTGAGGTTAC TACTAACACA TCCCCTCAGC AGGGACATGG GTACGTTCTT GCCTCAAGCC 181 ATCGAAGTGC TGCAGTCTCC CTGAACCCTT CCCACCGAAG ATCAGAAGCT GCACATCCCA 241 CCACTCCCCA TTCGGCATCA GACTACCCTC GATCTGTCTC CCTCCAGTCA GGACCTGGAC 301 ACTATGCAGT ACCCACTCCT CGGGGAACCG AGACTGGACC AAGAACAGAA TCATCCCGCC 361 ATTCCTCTCC CCATCTAAAG AGCCAGAAGA CTCAGACACT GGCTTCCCAT GCTTCAAGCA 421 GACAATGGAA AGTTAGTCCA CCCAGAGAGG AAGCAGCACG AAGAGGCAGT GAGAGCAAGT 481 CAGGGCGCGA GGTCGGCCAT CATGCTTCAT CAATCCCAGA TGCCAAATCT ACTCATCAGT 541 TGAGTTTTCA AGACCAGAAG AATAACTTAC AATCACAAAT CTTAGAAGAT GACCCACCAT 601 CCAAGGTCCA GAACCCCCAA GGAGTCAGAG TTCCCCGTAG GATTTTGTCT TACCCAAAGG 661 ATGAAGCAGT ACAAACTGAG CCCATCCAAA GAATTACGAC TACTAGTGAG ATCAGATCTC 721 CAAGGAGTCC CTCTCTCCTA GAGCACGGAA GCAGCTGTGT CTCTGCAGAC TATCAGACAG 781 CCCAGAGAAG GGTCCCTGTA GAAGAATCAG AAACAGGTCC TTACGGTCCA ATTCCTTCAA 841 AACCCAAGGC CTTGTATAGG AATATGAACT TGGACTCATT GCTCAAACTC TCTGTCCTTA 901 AAGATTCTGA TGGTGTACAC CGAGTTTCTG CACGGGTAGA CCCTGAGTCT CTTCATAAGT 961 ATTCTGCCTA TCCTGAAACC AAGCCCTCCG CAAAGGTCTT AGTATCATCA CAGGTGGAGT 1021 CCAACGTGAG GACCCCAATC CGAGGAAACA GCGAGGTTGG CCGCAGGGTC ACCATCTCCC 1081 CAGGGGTACA GTCAGTAGAG CCAACTCACC ATGTGACAGT TCCATCAGTG TCTGAGGGCT 1141 CCCACAAGTC ATCCATGTTT GTTACTCCAG AGCCCATCTA TAAACAGCAA ACCCAAAAAC 1201 CCCCAGAAAT TACTTACATG TCCCAAGGAC CTACACCCAG GTATCCAGAA CTCTCGCAAA 1261 AGCCCTCCAT CCATGCAGAA CTGGAACTGA CCCCTAGGCC CTTGCCTCCT CGGTCCTTAC 1321 CTAGGTACGG ACCTGACTCC TCATGGTGGC CCTTGCTGAA TCCTGAAGTT GAAACACCCC 1381 AAAGCCAGCT GACAACACCG GATTTTGAGC CTAAGTGCTC TCCTTCCCTA GATCTTTTAT 1441 TGTCCGGTTT TAAAATAGAC TCTAGCCCTT TCTGTGAGGA TCTGAAGTTC CAGAGAGAGA 1501 AGGCAAGCCT ATCACCACCA TCACCACCAA AGGAGTTTCC AAGTTGGGCA CCACTGAGTG 1561 AAGTGCCACA GACCCCCAAG CACACCTGCA AACAACCCAT TCAAAGGTTT ACTGCTTTCT 1621 TCCTGGATGT CTCTGAGGAA ATGTACAATC GTGTCATCTG GTGGCTAAAA GGTCTGTGCT 1681 TTTCCCTCCT ATGGGCCCAC TGTGGGAGCT TGGGGGATGG GAGGACAGGT GAGGAGTGGC 1741 ATCTATGTAT CTACAGAGCT GGGTCGTTTA GGAGATACCC AACTTTCTTG TACAAAGTtg 1801 gcattataag aaagcattgc ttatcaattt gttgcaacga ac