Construct: ORF ccsbBroadEn_09973

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003689.1_s300c1, BRDN0000386508
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FAM126B (285172)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 285172 FAM126B family with sequence simila... NM_001321618.1 99.9% 100% 99G>A
2 human 285172 FAM126B family with sequence simila... NM_001321619.2 99.9% 100% 99G>A
3 human 285172 FAM126B family with sequence simila... NM_001321621.2 99.9% 100% 99G>A
4 human 285172 FAM126B family with sequence simila... NM_001321622.2 99.9% 100% 99G>A
5 human 285172 FAM126B family with sequence simila... NM_173822.5 99.9% 100% 99G>A
6 human 285172 FAM126B family with sequence simila... XM_017003881.1 99.9% 100% 99G>A
7 human 285172 FAM126B family with sequence simila... NM_001321623.1 90.3% 90.4% 99G>A;991_1158del
8 human 285172 FAM126B family with sequence simila... NM_001321624.1 90.3% 90.4% 99G>A;991_1158del
9 human 285172 FAM126B family with sequence simila... NM_001321625.2 90.3% 90.4% 99G>A;991_1158del
10 human 285172 FAM126B family with sequence simila... NM_001321626.2 90.3% 90.4% 99G>A;991_1158del
11 human 285172 FAM126B family with sequence simila... XM_006712443.3 90.3% 90.4% 99G>A;991_1158del
12 human 285172 FAM126B family with sequence simila... XM_011511002.2 90.3% 90.4% 99G>A;991_1158del
13 human 285172 FAM126B family with sequence simila... XM_017003879.1 90.3% 90.4% 99G>A;991_1158del
14 human 285172 FAM126B family with sequence simila... XM_017003880.1 90.3% 90.4% 99G>A;991_1158del
15 human 285172 FAM126B family with sequence simila... NM_001321629.1 84.5% 84.5% 0_1ins246
16 human 285172 FAM126B family with sequence simila... XM_017003883.1 84.5% 84.5% 0_1ins246
17 human 285172 FAM126B family with sequence simila... NM_001321627.1 76.4% 76.4% 0_1ins246;745_912del
18 human 285172 FAM126B family with sequence simila... NM_001321628.2 76.4% 76.4% 0_1ins246;745_912del
19 human 285172 FAM126B family with sequence simila... XM_017003882.1 76.4% 76.4% 0_1ins246;745_912del
20 mouse 213056 Fam126b family with sequence simila... NM_001310599.1 91.7% 95.2% (many diffs)
21 mouse 213056 Fam126b family with sequence simila... NM_172513.3 91.7% 95.2% (many diffs)
22 mouse 213056 Fam126b family with sequence simila... XM_017319657.1 91.7% 95.2% (many diffs)
23 mouse 213056 Fam126b family with sequence simila... NM_001310598.1 82.9% 86.1% (many diffs)
24 mouse 213056 Fam126b family with sequence simila... XM_006495832.2 82.9% 86.1% (many diffs)
25 mouse 213056 Fam126b family with sequence simila... XM_006495833.2 82.9% 86.1% (many diffs)
26 mouse 213056 Fam126b family with sequence simila... XM_017319658.1 67% 69% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1656
ORF length:
1590
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGCT GGGAACTGAC CGTTGTGTTG TGGAAGAATG GTTATCAGAA TTCAAGGCAT
121TACCTGACAC TCAGATCACC AGTTATGCAG CAACTTTACA CCGAAAAAAA ACACTTGTAC
181CAGCCCTCTA TAAAGTTATT CAAGATTCAA ATAATGAGCT CCTGGAGCCT GTCTGCCATC
241AGCTGTTTGA GCTCTATCGT AGCTCAGAGG TTCGACTTAA GAGGTTCACA CTGCAGTTCT
301TGCCAGAATT GATGTGGGTT TATTTACGGC TTACAGTTAG CCGAGACAGA CAGAGTAATG
361GTTGCATTGA AGCACTTCTG TTAGGAATTT ACAATTTGGA AATCGCTGAT AAAGATGGGA
421ACAATAAAGT TCTGTCTTTC ACTATCCCCT CCTTATCCAA GCCTTCAATA TACCATGAAC
481CTTCAACAAT TGGATCCATG GCTTTGACAG AAGGGGCATT GTGTCAGCAT GATCTCATCA
541GAGTTGTTTA TAGTGATCTT CATCCTCAGA GGGAAACATT CACTGCACAG AACCGGTTTG
601AAGTCCTGAG TTTTCTCATG CTGTGTTATA ATTCTGCTAT TGTATATATG CCTGCCTCAT
661CTTACCAATC TCTTTGTCGG ATGGGTTCCA GGGTTTGTGT GAGTGGCTTT CCACGGCAAC
721ATGAAAAACA CTGGAAAGAA CTCTGTGGTC GAATAGTATT GGATCCTGAA TTTATGGTGC
781AACTTCTCAC AGGGGTTTAT TATGCCATGT ATAATGGACA GTGGGACCTT GGCCAGGAAG
841TTCTTGATGA TATCATTTAT AGAGCCCAGC TAGAGCTTTT TTCTCAACCA CTATTGGTTG
901CCAATGCCAT GAAAAACTCA TTACCATTTG ATGCTCCTGA TTCTACACAA GAAGGCCAGA
961AAGTCCTTAA AGTTGAAGTC ACTCCAACAG TGCCGAGGAT TTCTCGGACT GCAATTACAA
1021CAGCTTCAAT CCGTCGTCAT AGATGGAGAA GAGAAGGTGC TGAGGGTGTA AATGGAGGAG
1081AGGAGTCTGT AAACCTGAAT GATGCAGATG AAGGATTTTC ATCAGGGGCT TCCCTCAGCA
1141GTCAGCCAAT TGGGACCAAA CCATCCTCCT CTTCTCAGAG GGGAAGCTTA AGGAAAGTAG
1201CAACTGGGCG TTCAGCCAAG GATAAAGAAA CAGCCTCTGC CATCAAATCC AGTGAGAGCC
1261CTCGAGATTC AGTAGTTCGC AAGCAGTATG TACAGCAACC AACTGATCTT AGTGTAGATT
1321CAGTTGAGCT GACACCAATG AAGAAACACC TGAGCCTGCC TGCTGGCCAG GTGGTGCCAA
1381AAATCAATAG CTTAAGTCTA ATCCGGACAG CCAGTGCTTC CTCAAGTAAA TCATTTGACT
1441ATGTAAATGG CAGTCAAGCA AGTACCAGCA TTGGGGTTGG CACTGAGGGA GGTACTAATT
1501TAGCAGCCAA CAATGCTAAT CGATACTCAA CTGTCAGTCT GCAGGAAGAC CGGCTAGGTC
1561AAGCTGGCGA AGGTAAAGAG CTCCTCAGCC CAGGAGCCCC CTTGACCAAG CAGTCTCGAT
1621CCCCAAGTTT CAATATGCAG CTAATATCCC AGGTGTACCC AACTTTCTTG TACAAAGTtg
1681gcattataag aaagcattgc ttatcaattt gttgcaacga ac

Download FASTA (ORF) (Full)