Construct: ORF ccsbBroadEn_10043

Construct Description:

• Construct Type: ORF
• Other Identifiers: ORF004290.1_s300c1, BRDN0000455765
• DNA Barcode: None
• Epitope Tag: None
• Notes: No stop codon in insert

Originally Annotated References:

• Gene: HNRNPCL1 (343069)

Vector Information:

• Vector Backbone: pDONR223
• Pol II Cassette 1: n/a
• Pol II Cassette 2: n/a
• Selection Marker: n/a
• Visible Reporter: n/a
• Epitope Tag: n/a

Current transcripts matched by this ORF:

	Taxon	Gene	Symbol	Description	Transcript	Nuc. Match %	Prot. Match %	Match Diffs
1	human	343069	HNRNPCL1	heterogeneous nuclear ribon...	NM_001013631.2	100%	100%
2	human	440563	HNRNPCL2	heterogeneous nuclear ribon...	NM_001136561.3	97.2%	96.2%	(many diffs)
3	human	649330	HNRNPCL3	heterogeneous nuclear ribon...	NM_001146181.2	95.4%	93.5%	(many diffs)
4	human	101060301	HNRNPCL4	heterogeneous nuclear ribon...	NM_001302551.1	95.3%	93.5%	(many diffs)
5	human	3183	HNRNPC	heterogeneous nuclear ribon...	NM_001077443.1	94.6%	90.7%	(many diffs)
6	human	3183	HNRNPC	heterogeneous nuclear ribon...	NM_004500.3	94.6%	90.7%	(many diffs)
7	human	3183	HNRNPC	heterogeneous nuclear ribon...	XM_006720125.3	94.6%	90.7%	(many diffs)
8	human	3183	HNRNPC	heterogeneous nuclear ribon...	XM_011536712.2	94.6%	90.7%	(many diffs)
9	human	3183	HNRNPC	heterogeneous nuclear ribon...	XM_017021252.2	94.6%	90.7%	(many diffs)
10	human	3183	HNRNPC	heterogeneous nuclear ribon...	XM_017021253.2	94.6%	90.7%	(many diffs)
11	human	3183	HNRNPC	heterogeneous nuclear ribon...	XM_024449558.1	94.6%	90.7%	(many diffs)
12	human	3183	HNRNPC	heterogeneous nuclear ribon...	XM_024449559.1	94.6%	90.7%	(many diffs)
13	human	3183	HNRNPC	heterogeneous nuclear ribon...	NM_001077442.1	90.6%	86.9%	(many diffs)
14	human	3183	HNRNPC	heterogeneous nuclear ribon...	NM_031314.2	90.6%	86.9%	(many diffs)
15	human	3183	HNRNPC	heterogeneous nuclear ribon...	XM_011536708.1	90.6%	86.9%	(many diffs)
16	human	3183	HNRNPC	heterogeneous nuclear ribon...	XM_011536709.3	90.6%	86.9%	(many diffs)
17	human	3183	HNRNPC	heterogeneous nuclear ribon...	XM_011536710.2	90.6%	86.9%	(many diffs)
18	human	3183	HNRNPC	heterogeneous nuclear ribon...	XM_011536711.2	90.6%	86.9%	(many diffs)
19	human	3183	HNRNPC	heterogeneous nuclear ribon...	XM_024449556.1	90.6%	86.9%	(many diffs)
20	human	3183	HNRNPC	heterogeneous nuclear ribon...	XM_024449557.1	90.6%	86.9%	(many diffs)
21	mouse	15381	Hnrnpc	heterogeneous nuclear ribon...	NM_001170983.1	88.3%	88.7%	(many diffs)
22	mouse	15381	Hnrnpc	heterogeneous nuclear ribon...	XM_006518578.2	88.3%	88.7%	(many diffs)
23	mouse	15381	Hnrnpc	heterogeneous nuclear ribon...	XM_017315857.1	88.3%	88.7%	(many diffs)
24	mouse	15381	Hnrnpc	heterogeneous nuclear ribon...	XM_017315858.1	88.3%	88.7%	(many diffs)
25	mouse	15381	Hnrnpc	heterogeneous nuclear ribon...	NM_001170984.1	88%	88.4%	(many diffs)
26	mouse	15381	Hnrnpc	heterogeneous nuclear ribon...	XM_006518581.2	88%	88.4%	(many diffs)
27	mouse	15381	Hnrnpc	heterogeneous nuclear ribon...	XM_017315859.1	88%	88.4%	(many diffs)
28	mouse	15381	Hnrnpc	heterogeneous nuclear ribon...	NM_001170981.1	86.4%	86.7%	(many diffs)
29	mouse	15381	Hnrnpc	heterogeneous nuclear ribon...	NM_001170982.1	86.4%	86.7%	(many diffs)
30	mouse	15381	Hnrnpc	heterogeneous nuclear ribon...	XM_017315855.1	86.4%	86.7%	(many diffs)
31	mouse	15381	Hnrnpc	heterogeneous nuclear ribon...	XM_017315856.1	86.4%	86.7%	(many diffs)
32	mouse	15381	Hnrnpc	heterogeneous nuclear ribon...	XM_006518574.2	84.5%	85%	(many diffs)
33	mouse	15381	Hnrnpc	heterogeneous nuclear ribon...	XM_017315850.1	84.5%	85%	(many diffs)
34	mouse	15381	Hnrnpc	heterogeneous nuclear ribon...	XM_017315851.1	84.5%	85%	(many diffs)
35	mouse	15381	Hnrnpc	heterogeneous nuclear ribon...	XM_011244965.2	84.3%	84.6%	(many diffs)
36	mouse	15381	Hnrnpc	heterogeneous nuclear ribon...	XM_017315852.1	84.3%	84.6%	(many diffs)
37	mouse	15381	Hnrnpc	heterogeneous nuclear ribon...	XM_017315853.1	84.3%	84.6%	(many diffs)
38	mouse	15381	Hnrnpc	heterogeneous nuclear ribon...	XM_017315854.1	84.3%	84.6%	(many diffs)
39	mouse	15381	Hnrnpc	heterogeneous nuclear ribon...	NM_016884.3	82.9%	83.1%	(many diffs)
40	mouse	15381	Hnrnpc	heterogeneous nuclear ribon...	XM_006518571.3	82.9%	83.1%	(many diffs)
41	mouse	15381	Hnrnpc	heterogeneous nuclear ribon...	XM_006518572.3	82.9%	83.1%	(many diffs)
42	mouse	15381	Hnrnpc	heterogeneous nuclear ribon...	XM_017315849.1	82.9%	83.1%	(many diffs)

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:

69

ORF end:

948

ORF length:

879

Sequence:

1	gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61	TTGGCACCAT GGCCAGCAAC GTTACCAACA AGATGGATCC TCACTCCATG AACTCCCGTG
121	TGTTCATTGG GAATCTCAAC ACTCTTGTTG TCAAGAAATC GGATGTGGAG GCGATCTTTT
181	CCAAGTATGG CAAAATTGCG GGCTGCTCTG TTCATAAGGG CTTTGCCTTC GTTCAATATG
241	ATAAGGAGAA AAATGCCCGG GCTGCTGTAG CAGGAGAGGA TGGCAGAATG ATTGCTAGCC
301	AGGTTGTAGA TATTAACCTG GCTGCGGAGC CAAAAGTGAA CCGAGGAAAC GCAGGTGTGA
361	AACGATCAGC AGCGGAGATG TACGGCTCCT CTTTTGACTT GGACTATGGC TTTCAACGGG
421	ATTATTATGA TGGAATGTAC AGTTTCCCAG CACGTGTACC TCCTCCTCCT CCCATTGCTC
481	TGGCTGTAGT GCCCTCGAAA CGTCAACGTC TATCAGGAAA CACCTCACGA AGGGGCAAAA
541	GTGGCTTCAA TTCTAAGAGT GGAAAGCGGG GATCTTCCAA GTCTGGAAAG TTGAAAGGTG
601	ATGACCTTCA GGCCATTAAG CAGGAGTTGA CCCAGATAAA ACAGAAAGTG GATTCTCTCC
661	TGGAAAACCT GGAAAAAATT GAAAAGGAAC AGAGCAAACA AGAGGTAGAG GTGAAAAATG
721	CTAAGTCAGA AGAGGAGCAG AGCAGTAGCT CCATGAAGAA AGATGAGACT CATGTGAAGA
781	TGGAGTCTGA GGGGGGTGCA GAAGACTCTG CTGAGGAGGG GGACCCACTG GATGATGATG
841	TTAATGAAGA TCAGGGGGAT GACCAGCTGG AGTTGATCAA GGATGATGAA AAAGAGGCTG
901	AGGAAGGAGA GGATGACAGA GACAGCACCA ATGGCCAGGA TGACTCTTTG CCAACTTTCT
961	TGTACAAAGT TGGcattata agaaagcatt gcttatcaat ttgttgcaac gaac

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