Construct: ORF ccsbBroadEn_10091
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012856.1_s300c1, BRDN0000455985
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- C1QTNF9B (387911)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 387911 | C1QTNF9B | C1q and TNF related 9B | NM_001007537.2 | 99.8% | 100% | 687T>C |
| 2 | human | 338872 | C1QTNF9 | C1q and TNF related 9 | NM_001303137.2 | 98.7% | 97.5% | (many diffs) |
| 3 | human | 338872 | C1QTNF9 | C1q and TNF related 9 | NM_001303138.1 | 98.7% | 97.5% | (many diffs) |
| 4 | human | 338872 | C1QTNF9 | C1q and TNF related 9 | NM_178540.5 | 98.7% | 97.5% | (many diffs) |
| 5 | human | 387911 | C1QTNF9B | C1q and TNF related 9B | NR_104426.1 | 34.1% | 1_210del;473_474ins514;696_905del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1068
- ORF length:
- 999
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GAGGATCTGG TGGCTTCTGC TTGCCATTGA AATCTGCACA GGGAACATAA 121 ACTCACAGGA CACCTGCAGG CAAGGGCACC CTGGAATCCC TGGGAACCCC GGTCACAATG 181 GTCTGCCTGG AAGAGATGGA CGAGACGGAG CGAAGGGTGA CAAAGGCGAT GCAGGAGAAC 241 CAGGATGTCC TGGCAGCCCG GGGAAGGATG GGACGAGTGG AGAGAAGGGA GAACGAGGAG 301 CAGATGGAAA AGTTGAAGCA AAAGGCATCA AAGGTGATCA AGGCTCAAGA GGATCCCCAG 361 GAAAACATGG CCCCAAGGGG CTTGCAGGGC CCATGGGAGA GAAAGGCCTC CGAGGAGAGA 421 CTGGGCCTCA GGGGCAGAAG GGGAATAAGG GTGACGTGGG TCCCACTGGT CCTGAGGGGC 481 CAAGGGGCAA CATTGGGCCT TTGGGCCCAA CTGGTTTACC GGGCCCCATG GGCCCTATTG 541 GAAAGCCTGG TCCCAAGGGA GAAGCTGGAC CCACGGGGCC CCAGGGTGAG CCAGGAGTCC 601 GGGGAATAAG AGGCTGGAAA GGAGATCGAG GAGAGAAAGG GAAAATCGGT GAGACTCTAG 661 TCTTGCCAAA AAGTGCTTTC ACTGTGGGGC TCACGGTGCT GAGCAAGTTT CCTTCTTCAG 721 ATGTGCCCAT TAAATTTGAT AAGATCCTGT ATAACGAATT CAACCATTAT GATACAGCAG 781 TGGGGAAATT CACGTGCCAC ATTGCTGGGG TCTATTACTT CACCTACCAC ATCACTGTTT 841 TCTCCAGGAA TGTTCAGGTG TCTTTGGTCA AAAACGGAGT AAAAATACTG CACACCAGAG 901 ATGCTTACGT GAGCTCTGAG GACCAGGCCT CTGGCAGCAT TGTCCTGCAG CTGAAGCTCG 961 GGGATGAGAT GTGGCTGCAG GTGACAGGAG GAGAGAGGTT CAATGGCTTG TTTGCTGATG 1021 AGGACGATGA CACAACTTTC ACAGGGTTCC TTCTGTTCAG CAGCCAGTTG CCAACTTTCT 1081 TGTACAAAGT TGGcattata agaaagcatt gcttatcaat ttgttgcaac gaac