Construct: ORF ccsbBroadEn_10207

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007541.1_s300c1, BRDN0000392682
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ERLIN1 (10613)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10613 ERLIN1 ER lipid raft associated 1 NM_001100626.2 99.4% 99.4% 1_6delATGAAT
2 human 10613 ERLIN1 ER lipid raft associated 1 NM_001347857.2 99.4% 99.4% 1_6delATGAAT
3 human 10613 ERLIN1 ER lipid raft associated 1 NM_001347859.2 99.4% 99.4% 1_6delATGAAT
4 human 10613 ERLIN1 ER lipid raft associated 1 NM_001347860.2 99.4% 99.4% 1_6delATGAAT
5 human 10613 ERLIN1 ER lipid raft associated 1 NM_001347861.2 99.4% 99.4% 1_6delATGAAT
6 human 10613 ERLIN1 ER lipid raft associated 1 NM_006459.4 99.4% 99.4% 1_6delATGAAT
7 human 10613 ERLIN1 ER lipid raft associated 1 NM_001347856.2 76.3% 76.3% 0_1ins246
8 human 10613 ERLIN1 ER lipid raft associated 1 NM_001347858.2 54.3% 54.3% 0_1ins474
9 human 10613 ERLIN1 ER lipid raft associated 1 NR_144758.2 32% 1_85del;734_805del;1196_3235del
10 human 10613 ERLIN1 ER lipid raft associated 1 NR_144759.2 31.5% 1_143del;792_863del;1254_3293del
11 human 10613 ERLIN1 ER lipid raft associated 1 NR_144756.2 30.9% 1_85del;583_584ins59;1065_3104del
12 human 10613 ERLIN1 ER lipid raft associated 1 NR_144755.2 29.5% (many diffs)
13 human 10613 ERLIN1 ER lipid raft associated 1 NR_144760.2 29.4% 1_248del;746_747ins59;1228_3267del
14 human 10613 ERLIN1 ER lipid raft associated 1 NR_144757.2 28.7% (many diffs)
15 mouse 226144 Erlin1 ER lipid raft associated 1 NM_001164359.1 90.8% 95.4% (many diffs)
16 mouse 226144 Erlin1 ER lipid raft associated 1 NM_001164360.1 90.8% 95.4% (many diffs)
17 mouse 226144 Erlin1 ER lipid raft associated 1 NM_145502.3 90.8% 95.4% (many diffs)
18 mouse 226144 Erlin1 ER lipid raft associated 1 XM_006526998.3 90.8% 95.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1104
ORF length:
1038
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAC TCAAGCCCGG GTTCTGGTGG CTGCAGTGGT GGGGTTGGTG GCTGTCCTGC
121TCTACGCCTC CATCCACAAG ATTGAGGAGG GCCATCTGGC TGTGTACTAC AGGGGAGGAG
181CTTTACTAAC TAGCCCCAGT GGACCAGGCT ATCATATCAT GTTGCCTTTC ATTACTACGT
241TCAGATCTGT GCAGACAACA CTACAAACTG ATGAAGTTAA AAATGTGCCT TGTGGAACAA
301GTGGTGGGGT CATGATCTAT ATTGACCGAA TAGAAGTGGT TAATATGTTG GCTCCTTATG
361CAGTGTTTGA TATCGTGAGG AACTATACTG CAGATTATGA CAAGACCTTA ATCTTCAATA
421AAATCCACCA TGAGCTGAAC CAGTTCTGCA GTGCCCACAC ACTTCAGGAA GTTTACATTG
481AATTGTTTGA TCAAATAGAT GAAAACCTGA AGCAAGCTCT GCAGAAAGAC TTAAACCTCA
541TGGCCCCAGG TCTCACTATA CAGGCTGTGC GTGTTACAAA ACCCAAAATC CCAGAAGCCA
601TAAGAAGAAA TTTTGAGTTA ATGGAGGCTG AGAAGACAAA ACTCCTTATA GCTGCACAGA
661AACAAAAGGT TGTGGAAAAA GAAGCTGAGA CAGAGAGGAA AAAGGCAGTT ATAGAAGCAG
721AGAAGATTGC ACAAGTGGCA AAAATTCGGT TTCAGCAGAA AGTGATGGAA AAAGAAACTG
781AAAAGCGCAT TTCTGAAATC GAAGATGCTG CATTCCTGGC CCGAGAGAAA GCGAAAGCAG
841ATGCTGAATA TTATGCTGCA CACAAATATG CCACCTCAAA CAAGCACAAG TTGACCCCGG
901AATATCTGGA GCTCAAAAAG TACCAGGCCA TTGCTTCTAA CAGTAAGATC TATTTTGGCA
961GCAACATCCC TAACATGTTC GTGGACTCCT CATGTGCTTT GAAATATTCA GATATTAGGA
1021CTGGAAGAGA AAGCTCACTC CCCTCTAAGG AGGCTCTTGA ACCCTCTGGA GAGAACGTCA
1081TCCAAAACAA AGAGAGCACA GGTTGCCCAA CTTTCTTGTA CAAAGTtggc attataagaa
1141agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)