Construct: ORF ccsbBroadEn_10236
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007312.1_s300c1, BRDN0000387590
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- INGX (27160)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 3621 | ING1 | inhibitor of growth family ... | NM_198218.2 | 17.6% | 14.2% | (many diffs) |
| 2 | human | 27160 | INGX | inhibitor of growth family,... | NR_002226.3 | 16.3% | 1_202del;329_769del | |
| 3 | human | 3621 | ING1 | inhibitor of growth family ... | NM_198217.2 | 15.7% | 12.7% | (many diffs) |
| 4 | human | 3621 | ING1 | inhibitor of growth family ... | NM_001267728.1 | 14.1% | 11.4% | (many diffs) |
| 5 | human | 3621 | ING1 | inhibitor of growth family ... | NM_198219.3 | 13.2% | 10.7% | (many diffs) |
| 6 | human | 3621 | ING1 | inhibitor of growth family ... | NM_005537.5 | 8.7% | 7.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 195
- ORF length:
- 126
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GATCCGCTGC GACAACGAAT GCCCCATCGA GTGGTTCCGC TTCTCGTGTG 121 TGAGTCTCAA CCATAAACCA AAGCGCAAGT GGTACTGTTC CAGATGCCGG GGAAAGAACG 181 ATGGGCAAAG CCCTTTGCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct 241 tatcaatttg ttgcaacgaa c