Construct: ORF ccsbBroadEn_10246
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010224.1_s300c1, BRDN0000388053
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CENPBD1P1 (65996)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 147166 | TRIM16L | tripartite motif containing... | NM_001353226.2 | 36.6% | 15.3% | (many diffs) |
| 2 | human | 112267959 | LOC112267959 | uncharacterized protein C9o... | XM_024446606.1 | 33% | 13.8% | (many diffs) |
| 3 | human | 65996 | CENPBD1P1 | CENPB DNA-binding domains c... | NR_026052.1 | 17.4% | 1_967del;1553_3359del | |
| 4 | human | 107984344 | LOC107984344 | uncharacterized LOC107984344 | XR_001748282.2 | 16.2% | (many diffs) | |
| 5 | human | 414761 | HCG15 | HLA complex group 15 | NR_135289.2 | 14.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 654
- ORF length:
- 585
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GAGTCGGCCC CTGGGTCAAA GCCGCCGGAG ACCTCCTGAC CCTATTGCTC 121 GGTGGCAACG CAGCCGGCGA CTTCAAGCTG AAGGCCCTGC TGGGGTACCC CTCGGAGAAC 181 CCGTGTTTCC TCAAGGGCTC CTTCAAGCCC AACCTGCCCT TGGTGTGGTG CTCGCACAAG 241 AAAGCCTGGG TACAGCCTGG GTGACAGAGC GAGACTCCGT CTCAAAAAAA AAAAAAAAAG 301 CCTGGGTAAC CATGAGCCTC TTCCAGGAGT GGTTCCTGCA CTTCTGCTCT ACAGTGGAGG 361 GCGCTGCACC CAGTACGACC TTCCCTACAA GGGGCTGCCC ATCCTGGACA GCACTCCCGG 421 CCACCCTGGG TGTTGAGACA GAGTCTGGCT CTGTCGCGCA GGCTGGAGTG CGGTGGCGCG 481 ATCTCGGCTC ACTGCAACCT CCGCCTCCCG GGTTCACGCC ATTCTCCTGC CTCAGCCTCC 541 CAGGTAGCTG GGACTACAGG CGCCCGCCAC CACGCCCGGC TAATTTTTTT GTATTTTTAG 601 TAGAGACGGG GTTTCACCGT GTTAGCCAGA ATGGTCTCGG TCTCCTGACC CCATTGCCAA 661 CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac