Construct: ORF ccsbBroadEn_10253

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013337.1_s300c1, BRDN0000391276
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ALG13 (79868)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79868 ALG13 ALG13 UDP-N-acetylglucosami... XM_017029855.1 80.1% 80.1% 1_342del
2 human 79868 ALG13 ALG13 UDP-N-acetylglucosami... XM_017029854.2 74.8% 74.8% 1_153del;813_884del;1122_1358del
3 human 79868 ALG13 ALG13 UDP-N-acetylglucosami... XM_011531037.1 68.6% 68.6% 1_321del;981_1052del;1290_1526del
4 human 79868 ALG13 ALG13 UDP-N-acetylglucosami... XM_017029853.1 67.8% 67.8% 1_342del;1002_1073del;1311_1547del
5 human 79868 ALG13 ALG13 UDP-N-acetylglucosami... XM_017029852.1 54.7% 54.7% 1_828del;1488_1559del;1797_2033del
6 human 79868 ALG13 ALG13 UDP-N-acetylglucosami... XM_017029851.1 51.3% 51.3% 1_993del;1653_1724del;1962_2198del
7 human 79868 ALG13 ALG13 UDP-N-acetylglucosami... NM_001324293.1 51.2% 51.2% 1_1311del
8 human 79868 ALG13 ALG13 UDP-N-acetylglucosami... NM_001257230.2 48.1% 48.1% 1_1485del
9 human 79868 ALG13 ALG13 UDP-N-acetylglucosami... NM_001257234.1 48.1% 48.1% 1_1485del
10 human 79868 ALG13 ALG13 UDP-N-acetylglucosami... NM_001257237.1 48.1% 48.1% 1_1485del
11 human 79868 ALG13 ALG13 UDP-N-acetylglucosami... XM_011531034.2 47.9% 47.9% 1_1188del;1848_1919del;2157_2393del
12 human 79868 ALG13 ALG13 UDP-N-acetylglucosami... XM_006724697.3 43.4% 43.4% 1_1485del;2145_2216del;2454_2690del
13 human 79868 ALG13 ALG13 UDP-N-acetylglucosami... XM_006724698.3 43.4% 43.4% 1_1485del;2145_2216del;2454_2690del
14 human 79868 ALG13 ALG13 UDP-N-acetylglucosami... XM_011531031.1 43.4% 43.4% 1_1485del;2145_2216del;2454_2690del
15 human 79868 ALG13 ALG13 UDP-N-acetylglucosami... XM_011531032.1 43.4% 43.4% 1_1485del;2145_2216del;2454_2690del
16 human 79868 ALG13 ALG13 UDP-N-acetylglucosami... XM_011531033.3 43.4% 43.4% 1_1485del;2145_2216del;2454_2690del
17 human 79868 ALG13 ALG13 UDP-N-acetylglucosami... NM_001324292.2 43.3% 43.3% 1_1797del
18 human 79868 ALG13 ALG13 UDP-N-acetylglucosami... NM_001257231.1 43.3% 43.3% 1_1563del;2460_2696del
19 human 79868 ALG13 ALG13 UDP-N-acetylglucosami... XM_017029848.1 42.6% 42.6% 1_1797del;1973_1974ins24
20 human 79868 ALG13 ALG13 UDP-N-acetylglucosami... XM_011531030.2 42.4% 42.4% 1_1797del;2457_2528del
21 human 79868 ALG13 ALG13 UDP-N-acetylglucosami... NM_001099922.3 40.3% 40.3% 1_1797del;2694_2930del
22 human 79868 ALG13 ALG13 UDP-N-acetylglucosami... XM_017029847.1 39.6% 38.9% (many diffs)
23 human 79868 ALG13 ALG13 UDP-N-acetylglucosami... XM_011531028.2 39.5% 39.5% 1_1797del;2457_2528del;2766_3002del
24 human 79868 ALG13 ALG13 UDP-N-acetylglucosami... XM_006724693.3 39.2% 39.2% 1_1797del;2456_2457ins39;2655_2891del
25 human 79868 ALG13 ALG13 UDP-N-acetylglucosami... XM_017029846.1 38.8% 38.8% (many diffs)
26 human 79868 ALG13 ALG13 UDP-N-acetylglucosami... NR_148693.2 38.7% 1_1525del;2903_3555del
27 human 79868 ALG13 ALG13 UDP-N-acetylglucosami... XM_024452449.1 29.5% 28.7% (many diffs)
28 human 79868 ALG13 ALG13 UDP-N-acetylglucosami... XM_017029849.1 28.9% 28% (many diffs)
29 human 79868 ALG13 ALG13 UDP-N-acetylglucosami... XM_017029850.2 27.7% 27.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1446
ORF length:
1377
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GACTATGGCT TACGGCAAGG GAGACCCCCT CCTCCCACCC AGGCTGCAGC
121ACAGTATGCA TTATGGGCAC GATCCTCCAA TGCACTACTC ACAGACAGCT GGCAATGTTA
181TGTCTAATGA ACATTTTCAT CCTCAGCATC CATCTCCGAG ACAAGGTCGG GGATATGGGA
241TGCCCAGGAA TTCATCTCGG TTTATAAACA GGCACAACAT GCCGGGCCCT AAAGTTGATT
301TTTACCCAGG CCCAGGTAAA AGGTGCTGCC AGAGCTATGA TAACTTCTCT TATAGATCTC
361GTTCATTTAG ACGTAGTCAC CGCCAGATGA GTTGTGTGAA TAAGGAGTCC CAGTATGGAT
421TTACCCCAGG GAATGGACAG ATGCCCAGGG GCTTGGAAGA AACTATTACT TTTTATGAAG
481TTGAAGAAGG GGATGAGACT GCTTATCCAA CTTTACCTAA TCATGGAGGT CCCTCTACAA
541TGGTTCCTGC TACTTCAGGA TACTGTGTTG GAAGGCGGGG ACATAGCTCA GGCAAACAGA
601CTTTGAATTT AGAGGAGGGC AATGGCCAGA GTGAAAATGG GCGATATCAT GAAGAATATC
661TTTATCGTGC AGAGCCAGAC TATGAAACTT CAGGTGTTTA TAGCACAACT GCATCTACAG
721CAAACTTGTC TCTTCAGGAC AGAAAGTCAT GTTCTATGTC TCCTCAGGAC ACAGTTACCT
781CATACAACTA CCCCCAGAAG ATGATGGGAA ATATTGCAGC AGTTGCAGCT TCCTGTGCCA
841ATAATGTTCC AGCTCCAGTC TTATCTAACG GTGCAGCGGC TAATCAAGCT ATTAGTACCA
901CTTCAGTTTC CTCACAGAAT GCTATACAGC CTCTCTTTGT ATCTCCACCT ACACACGGCA
961GGCCAGATAC AAAAGTTTTG CAGTACTATT TCAATCTAGG ATTGCAGTGC TATTACCACA
1021GCTACTGGCA CTCCATGGTC TATGTGCCAC AGATGCAGCA GCAGCTTCAT GTAGAGAATT
1081ATCCAGTCTA TACTGAGCCA CCTCTGGTAG ATCAAACCGT TCCTCAATGC TACAGTGAGG
1141TGAGGAGAGA AGATGGCATA CAGGCGGAAG CATCAGCAAA TGATACTTTT CCGAATGCTG
1201ATTCTTCATC TGTCCCTCAT GGAGCAGTCT ATTATCCAGT AATGTCAGAT CCCTATGGGC
1261AGCCACCTTT GCCAGGTTTT GACTCCTGCC TTCCGGTTGT GCCAGATTAT TCCTGTGTTC
1321CCCCCTGGCA TCCAGTTGGT ACAGCATATG GTGGTTCTTC TCAAATTCAT GGTGCTATAA
1381ATCCTGGGCC AATTGGCTGT ATTGCTCCAT CTCCCCCAGC TTCTCATTAT GTACCTCAGG
1441GTATGTTGCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt
1501gttgcaacga ac

Download FASTA (ORF) (Full)