Construct: ORF ccsbBroadEn_10290

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001025.1_s300c1, BRDN0000385763
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SNHG29 (125144)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 125144 SNHG29 small nucleolar RNA host ge... NR_045024.1 50.4% 1_155del;427_428ins44;502_642del
2 human 125144 SNHG29 small nucleolar RNA host ge... NR_027179.1 36.7% (many diffs)
3 human 125144 SNHG29 small nucleolar RNA host ge... NR_027171.1 36.6% 1_155del;427_428ins44;502_901del
4 human 125144 SNHG29 small nucleolar RNA host ge... NR_045026.1 36% (many diffs)
5 human 125144 SNHG29 small nucleolar RNA host ge... NR_045028.1 32.3% 1_155del;545_1202delinsT
6 human 125144 SNHG29 small nucleolar RNA host ge... NR_027667.1 30.9% 1_155del;546_1259del
7 human 125144 SNHG29 small nucleolar RNA host ge... NR_027161.1 29.1% 1_155del;428_559del;677_1334delinsT
8 human 125144 SNHG29 small nucleolar RNA host ge... NR_027160.1 29.1% 1_155del;428_506del;625_1338del
9 human 125144 SNHG29 small nucleolar RNA host ge... NR_045027.1 28.7% 1_155del;427_428ins44;501_1158delinsT
10 human 125144 SNHG29 small nucleolar RNA host ge... NR_027162.1 28% 1_155del;428_559del;678_1391del
11 human 125144 SNHG29 small nucleolar RNA host ge... NR_027159.1 27.4% 1_155del;427_428ins44;502_1215del
12 human 125144 SNHG29 small nucleolar RNA host ge... NR_045023.1 26.9% (many diffs)
13 human 125144 SNHG29 small nucleolar RNA host ge... NR_027175.1 25% (many diffs)
14 human 125144 SNHG29 small nucleolar RNA host ge... NR_027172.2 23.9% (many diffs)
15 human 125144 SNHG29 small nucleolar RNA host ge... NR_027165.1 23% (many diffs)
16 human 125144 SNHG29 small nucleolar RNA host ge... NR_027170.1 21.9% (many diffs)
17 human 125144 SNHG29 small nucleolar RNA host ge... NR_045022.1 20.6% (many diffs)
18 human 125144 SNHG29 small nucleolar RNA host ge... NR_027174.1 20.3% (many diffs)
19 human 125144 SNHG29 small nucleolar RNA host ge... NR_027177.1 20.2% (many diffs)
20 human 125144 SNHG29 small nucleolar RNA host ge... NR_045029.1 20% (many diffs)
21 human 125144 SNHG29 small nucleolar RNA host ge... NR_027178.1 18.9% (many diffs)
22 human 125144 SNHG29 small nucleolar RNA host ge... NR_027158.1 18.9% (many diffs)
23 human 125144 SNHG29 small nucleolar RNA host ge... NR_027173.1 18.9% (many diffs)
24 human 125144 SNHG29 small nucleolar RNA host ge... NR_027166.1 18% (many diffs)
25 human 125144 SNHG29 small nucleolar RNA host ge... NR_027176.1 14.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
456
ORF length:
390
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTT CCCGGGAAGC CTGTCTAGAG GGCGGAGGGC AGCTGTTGAG ATGGCGTGGC
121TCCCCGGCTC CTGCGCCCGC GTGGCTTTCG CGGCGGGCGC TGCGGCCCGG TATTGGACAG
181CCTGGCAGGG CAGCGCGGGG CCGAATCCGG CTGCCGTGGC TGAGGCTCAT GGATCACTCT
241TTTGTGGTAG GGCCACATCT GCCAGAGCCT GGAGTCTGCG AAGGCCGGGA CCCGGTTCCC
301CGGCCCACAG TGGGGGTGTG CAAACCCGAG AGAACTGGAT TGCGTACCCA CTGCAGAGTG
361CTGAAGACGG GGTAGCCACG AGGTTGCAAA TTCGTGAAGA ATCAGCATCA TGTTTGGCAG
421CTGAGTATTG GAGCCAGGAG CCTGCCATGA GGTTTTGCCC AACTTTCTTG TACAAAGTtg
481gcattataag aaagcattgc ttatcaattt gttgcaacga ac

Download FASTA (ORF) (Full)