Transcript: Human NR_027171.1

Homo sapiens small nucleolar RNA host gene 29 (SNHG29), transcript variant 15, long non-coding RNA.

Source:
NCBI, updated 2018-10-19
Taxon:
Homo sapiens (human)
Gene:
SNHG29 (125144)
Length:
901
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_027171.1
NBCI Gene record:
SNHG29 (125144)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_027171.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000116033 TGAAGAATCAGCATCATGTTT pLKO.1 441 3UTR 100% 5.625 3.938 N SNHG29 n/a
2 TRCN0000289955 TGAAGAATCAGCATCATGTTT pLKO_005 441 3UTR 100% 5.625 3.938 N SNHG29 n/a
3 TRCN0000116036 CTGAGGCTCATGGATCACTCT pLKO.1 310 3UTR 100% 2.640 1.848 N SNHG29 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_027171.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_10290 pDONR223 100% 36.6% None 1_155del;427_428ins44;502_901del n/a
2 ccsbBroad304_10290 pLX_304 0% 36.6% V5 1_155del;427_428ins44;502_901del n/a
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