Construct: ORF ccsbBroadEn_10386

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001918.1_s300c1, BRDN0000397220
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
HERC2P9 (440248)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 440248 HERC2P9 hect domain and RLD 2 pseud... NR_036443.1 43.1% 1_216del;1495_2962del
2 human 400322 HERC2P2 hect domain and RLD 2 pseud... NR_002824.3 20.5% (many diffs)
3 human 283755 HERC2P3 hect domain and RLD 2 pseud... NR_036432.1 17.7% (many diffs)
4 human 8924 HERC2 HECT and RLD domain contain... XR_001751410.1 14.2% (many diffs)
5 human 8924 HERC2 HECT and RLD domain contain... XM_017022697.1 13.1% 11.8% (many diffs)
6 human 8924 HERC2 HECT and RLD domain contain... XM_017022698.1 13.1% 11.8% (many diffs)
7 human 8924 HERC2 HECT and RLD domain contain... XR_931930.2 12.3% (many diffs)
8 human 8924 HERC2 HECT and RLD domain contain... XM_006720727.3 8.7% 8% (many diffs)
9 human 8924 HERC2 HECT and RLD domain contain... XM_005268276.5 8.6% 7.9% (many diffs)
10 human 8924 HERC2 HECT and RLD domain contain... XM_017022695.1 8.6% 7.9% (many diffs)
11 human 8924 HERC2 HECT and RLD domain contain... XM_017022696.1 8.6% 7.9% (many diffs)
12 human 8924 HERC2 HECT and RLD domain contain... XM_006720726.3 8.6% 7.8% (many diffs)
13 human 8924 HERC2 HECT and RLD domain contain... NM_004667.5 8.6% 7.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1344
ORF length:
1278
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC GGTCCTGGCT GTGGTTGGAG GCATCGATGG TCGCCTGCGC CTGGGTGGCC
121AAGTTGTGCA CGATGACTTT GGAGAAGTCA CCATGACTCG CATCACCCTG AAGGGCAAAA
181TCACCGTGCA GTTCTCTGAC ATGCGGACGT GTCGCGTTTG CCCATTGAAT CAGCTGAAAC
241CACTCCCTGC CGTGGCCTTT AATGTGAACA ACCTGCCCTT CACAGAGCCC ATGCTGTCTG
301TCTGGGCTCA GTTGGTGAAC CTCGCTGGAA GCAAGTTAGA AAAGCACAAA ATAAAGAAAT
361CGACTAAACA GGCCTTTGCA GGACAAGTGG ACCTGGACCT GCTGCGGTGC CAGCAGTTGA
421AGCTATACAT CCTGAAAGCA GGTCGGGCGC TGTTCTCCCA CCAGGATAAA CTGCGGCAGA
481TCCTGTCTCA GCCAGCTGTT CAGGAGACTG GAAGTGTTCA CACAGATGAT GGAGCAGTGG
541TATCACCTGA CCTTGGGGAC ATGTCTCCTG AAGGGCCGCA GCCCCCCATG ATCCTCTTGC
601AGCAGCTGCT GGCCTCGGCC ACCCAGCCGT CTCCTGTGAA GGCCATATTT GATAAACAGG
661AACTTGAGGC TGCTGCACTG GCCGTTTGCC AGTGCTTGGC TGTGGAGTCC ACTCACCCTT
721CGAGCCCAGG ATTTGAAGAC TGCAGCTCCA GTGAGGCCAC CACGCCTGTC GCCGTGCAGC
781ACATCCGCCC TGCCAGAGTG AAGAGGCGCA AGCAGTCGCC CGTTCCCGCT CTGCCGATCG
841TGGTGCAGCT CATGGAGATG GGATTTTCCA GAAGGAACAT CGAGTTTGCC CTGAAGTCTC
901TCACTGGTGC TTCCGGGAAT GCGTCCGGCT TGCCTGGTGT GGAAGCCTTG GTCGGGTGGC
961TGCTGGACCA CTCCGACATA CAGGTCACGG AGCTCTCAGA TGCAGACACG GTGTCCGACG
1021AGTATTCTGA CGAGGAGGTG GTGGAGGACG TGGATGATGC CGCCTACTCC ATGTCTACTG
1081GTGCTGTTGT GACGGAGAGC CAGACGTACA AAAACCGAGC TGGTTTCTTG GGTAATGATG
1141ATTATGCTGT ATATGTGAGA GAGAATATTC AGGTGGGAAT GATGGTTAGA TGCTGCCGAA
1201CATACGAAGA AGTGTGCGAA GGTGATGTGA TGTTGGCAAA GTCATCAAGC TGGACAGAGA
1261TGGATTGCAT GATCTCAATG TGCAGTGTGA CTGGCAGCAG AAAGGGGGCA TCTACTGGTT
1321TAGGTACATT CATGTGGAAC TTATACCCAA CTTTCTTGTA CAAAGTtggc attataagaa
1381agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)