Construct: ORF ccsbBroadEn_10463

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005824.1_s300c1, BRDN0000389901
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LRRC4C (57689)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 57689 LRRC4C leucine rich repeat contain... NM_001258419.2 99.3% 99.3% 1_12del;963C>G
2 human 57689 LRRC4C leucine rich repeat contain... NM_020929.2 99.3% 99.3% 1_12del;963C>G
3 human 57689 LRRC4C leucine rich repeat contain... XM_011520238.3 99.3% 99.3% 1_12del;963C>G
4 human 57689 LRRC4C leucine rich repeat contain... XM_011520239.3 99.3% 99.3% 1_12del;963C>G
5 human 57689 LRRC4C leucine rich repeat contain... XM_011520240.3 99.3% 99.3% 1_12del;963C>G
6 human 57689 LRRC4C leucine rich repeat contain... XM_011520241.3 99.3% 99.3% 1_12del;963C>G
7 human 57689 LRRC4C leucine rich repeat contain... XM_011520242.3 99.3% 99.3% 1_12del;963C>G
8 human 57689 LRRC4C leucine rich repeat contain... XM_011520243.3 99.3% 99.3% 1_12del;963C>G
9 human 57689 LRRC4C leucine rich repeat contain... XM_011520244.3 99.3% 99.3% 1_12del;963C>G
10 human 57689 LRRC4C leucine rich repeat contain... XM_017018070.2 99.3% 99.3% 1_12del;963C>G
11 human 57689 LRRC4C leucine rich repeat contain... XM_017018071.2 99.3% 99.3% 1_12del;963C>G
12 human 57689 LRRC4C leucine rich repeat contain... XM_017018072.2 99.3% 99.3% 1_12del;963C>G
13 human 57689 LRRC4C leucine rich repeat contain... XM_017018073.2 99.3% 99.3% 1_12del;963C>G
14 human 57689 LRRC4C leucine rich repeat contain... XM_017018074.2 99.3% 99.3% 1_12del;963C>G
15 human 57689 LRRC4C leucine rich repeat contain... XM_017018075.2 99.3% 99.3% 1_12del;963C>G
16 human 57689 LRRC4C leucine rich repeat contain... XM_017018076.2 99.3% 99.3% 1_12del;963C>G
17 human 57689 LRRC4C leucine rich repeat contain... XM_017018077.2 99.3% 99.3% 1_12del;963C>G
18 human 57689 LRRC4C leucine rich repeat contain... XM_017018078.2 99.3% 99.3% 1_12del;963C>G
19 human 57689 LRRC4C leucine rich repeat contain... XM_017018079.2 99.3% 99.3% 1_12del;963C>G
20 human 57689 LRRC4C leucine rich repeat contain... XM_024448626.1 99.3% 99.3% 1_12del;963C>G
21 human 57689 LRRC4C leucine rich repeat contain... XM_024448627.1 99.3% 99.3% 1_12del;963C>G
22 human 57689 LRRC4C leucine rich repeat contain... XM_024448628.1 99.3% 99.3% 1_12del;963C>G
23 human 57689 LRRC4C leucine rich repeat contain... NR_047674.1 62% 1_992del;1943C>G;2901_3074del
24 human 57689 LRRC4C leucine rich repeat contain... NR_047673.1 60.9% 1_1045del;1996C>G;2954_3127del
25 mouse 241568 Lrrc4c leucine rich repeat contain... NM_001289742.1 92.5% 99% (many diffs)
26 mouse 241568 Lrrc4c leucine rich repeat contain... NM_001289743.1 92.5% 99% (many diffs)
27 mouse 241568 Lrrc4c leucine rich repeat contain... NM_001289744.1 92.5% 99% (many diffs)
28 mouse 241568 Lrrc4c leucine rich repeat contain... NM_178725.6 92.5% 99% (many diffs)
29 mouse 241568 Lrrc4c leucine rich repeat contain... XM_006499479.3 92.5% 99% (many diffs)
30 mouse 241568 Lrrc4c leucine rich repeat contain... XM_017318139.1 92.5% 99% (many diffs)
31 mouse 241568 Lrrc4c leucine rich repeat contain... XM_017318140.1 92.5% 99% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1974
ORF length:
1908
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAC CTTACATCCA CAGCAGATAA TGATAGGTCC TAGGTTTAAC AGGGCCCTAT
121TTGACCCCCT GCTTGTGGTG CTGCTGGCTC TTCAACTTCT TGTGGTGGCT GGTCTGGTGC
181GGGCTCAGAC CTGCCCTTCT GTGTGCTCCT GCAGCAACCA GTTCAGCAAG GTGATTTGTG
241TTCGGAAAAA CCTGCGTGAG GTTCCGGATG GCATCTCCAC CAACACACGG CTGCTGAACC
301TCCATGAGAA CCAAATCCAG ATCATCAAAG TGAACAGCTT CAAGCACTTG AGACACTTGG
361AAATCCTACA GTTGAGTAGG AACCATATCA GAACCATTGA AATTGGGGCT TTCAATGGTC
421TGGCGAACCT CAACACTCTG GAACTCTTTG ACAATCGTCT TACTACCATC CCGAATGGAG
481CTTTTGTATA CTTGTCTAAA CTGAAGGAGC TCTGGTTGCG AAACAACCCC ATTGAAAGCA
541TCCCTTCTTA TGCTTTTAAC AGAATTCCTT CTTTGCGCCG ACTAGACTTA GGGGAATTGA
601AAAGACTTTC ATACATCTCA GAAGGTGCCT TTGAAGGTCT GTCCAACTTG AGGTATTTGA
661ACCTTGCCAT GTGCAACCTT CGGGAAATCC CTAACCTCAC ACCGCTCATA AAACTAGATG
721AGCTGGATCT TTCTGGGAAT CATTTATCTG CCATCAGGCC TGGCTCTTTC CAGGGTTTGA
781TGCACCTTCA AAAACTGTGG ATGATACAGT CCCAGATTCA AGTGATTGAA CGGAATGCCT
841TTGACAACCT TCAGTCACTA GTGGAGATCA ACCTGGCACA CAATAATCTA ACATTACTGC
901CTCATGACCT CTTCACTCCC TTGCATCATC TAGAGCGGAT ACATTTACAT CACAACCCTT
961GGAACTGTAA CTGTGACATA CTGTGGCTCA GCTGGTGGAT AAAAGACATG GCCCCGTCGA
1021ACACAGCTTG TTGTGCCCGG TGTAACACTC CTCCCAATCT AAAGGGGAGG TACATTGGAG
1081AGCTCGACCA GAATTACTTC ACATGCTATG CTCCGGTGAT TGTGGAGCCC CCTGCAGACC
1141TCAATGTCAC TGAAGGCATG GCAGCTGAGC TGAAATGTCG GGCCTCCACA TCCCTGACAT
1201CTGTATCTTG GATTACTCCA AATGGAACAG TCATGACACA TGGGGCGTAC AAAGTGCGGA
1261TAGCTGTGCT CAGTGATGGT ACGTTAAATT TCACAAATGT AACTGTGCAA GATACAGGCA
1321TGTACACATG TATGGTGAGT AATTCCGTTG GGAATACTAC TGCTTCAGCC ACCCTGAATG
1381TTACTGCAGC AACCACTACT CCTTTCTCTT ACTTTTCAAC CGTCACAGTA GAGACTATGG
1441AACCGTCTCA GGATGAGGCA CGGACCACAG ATAACAATGT GGGTCCCACT CCAGTGGTCG
1501ACTGGGAGAC CACCAATGTG ACCACCTCTC TCACACCACA GAGCACAAGG TCGACAGAGA
1561AAACCTTCAC CATCCCAGTG ACTGATATAA ACAGTGGGAT CCCAGGAATT GATGAGGTCA
1621TGAAGACTAC CAAAATCATC ATTGGGTGTT TTGTGGCCAT CACACTCATG GCTGCAGTGA
1681TGCTGGTCAT TTTCTACAAG ATGAGGAAGC AGCACCATCG GCAAAACCAT CACGCCCCAA
1741CAAGGACTGT TGAAATTATT AATGTGGATG ATGAGATTAC GGGAGACACA CCCATGGAAA
1801GCCACCTGCC CATGCCTGCT ATCGAGCATG AGCACCTAAA TCACTATAAC TCATACAAAT
1861CTCCCTTCAA CCACACAACA ACAGTTAACA CAATAAATTC AATACACAGT TCAGTGCATG
1921AACCGTTATT GATCCGAATG AACTCTAAAG ACAATGTACA AGAGACTCAA ATCTACCCAA
1981CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)

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