Transcript: Human NR_047674.1

Homo sapiens leucine rich repeat containing 4C (LRRC4C), transcript variant 4, non-coding RNA.

Source:
NCBI, updated 2018-12-04
Taxon:
Homo sapiens (human)
Gene:
LRRC4C (57689)
Length:
3074
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_047674.1
NBCI Gene record:
LRRC4C (57689)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_047674.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000161916 GCTCAGTGATGGTACGTTAAA pLKO.1 2195 3UTR 100% 13.200 18.480 N LRRC4C n/a
2 TRCN0000159200 GCGGATACATTTACATCACAA pLKO.1 1862 3UTR 100% 4.950 6.930 N LRRC4C n/a
3 TRCN0000164499 CGTCTTACTACCATCCCGAAT pLKO.1 1383 3UTR 100% 4.050 5.670 N LRRC4C n/a
4 TRCN0000160849 GAGGTATTTGAACCTTGCCAT pLKO.1 1577 3UTR 100% 2.640 3.696 N LRRC4C n/a
5 TRCN0000160909 GCACTTGAGACACTTGGAAAT pLKO.1 1271 3UTR 100% 10.800 7.560 N LRRC4C n/a
6 TRCN0000160450 CAGAATTACTTCACATGCTAT pLKO.1 2016 3UTR 100% 4.950 3.465 N LRRC4C n/a
7 TRCN0000108457 CCGAATGAACTCTAAAGACAA pLKO.1 2861 3UTR 100% 4.950 3.465 N Lrrc4c n/a
8 TRCN0000160498 CCGAATGAACTCTAAAGACAA pLKO.1 2861 3UTR 100% 4.950 3.465 N LRRC4C n/a
9 TRCN0000108458 CCCAGGAATTGATGAGGTCAT pLKO.1 2528 3UTR 100% 4.050 2.835 N Lrrc4c n/a
10 TRCN0000164017 CCGTTGGGAATACTACTGCTT pLKO.1 2272 3UTR 100% 2.640 1.848 N LRRC4C n/a
11 TRCN0000160566 CAACAAGGACTGTTGAAATTA pLKO.1 2665 3UTR 100% 1.500 1.050 N LRRC4C n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_047674.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_10463 pDONR223 100% 62% None 1_992del;1943C>G;2901_3074del n/a
2 ccsbBroad304_10463 pLX_304 0% 62% V5 1_992del;1943C>G;2901_3074del n/a
3 TRCN0000492330 GGCAGCCTCATTCGGAGGATCGTC pLX_317 21.7% 62% V5 1_992del;1943C>G;2901_3074del n/a
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