Construct: ORF ccsbBroadEn_10482
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000702.1_s300c1, BRDN0000455456
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- C10orf67 (256815)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 256815 | C10orf67 | chromosome 10 open reading ... | NM_153714.3 | 99.2% | 99.4% | 1_3delATG;141G>T |
| 2 | human | 256815 | C10orf67 | chromosome 10 open reading ... | XM_011519446.1 | 94.6% | 94.3% | (many diffs) |
| 3 | human | 256815 | C10orf67 | chromosome 10 open reading ... | XM_011519445.2 | 81.8% | 81.2% | (many diffs) |
| 4 | human | 256815 | C10orf67 | chromosome 10 open reading ... | NM_001351306.2 | 77% | 76.7% | (many diffs) |
| 5 | human | 256815 | C10orf67 | chromosome 10 open reading ... | XR_930488.1 | 46.3% | (many diffs) | |
| 6 | human | 256815 | C10orf67 | chromosome 10 open reading ... | XM_011519442.2 | 44.6% | 44.4% | (many diffs) |
| 7 | human | 256815 | C10orf67 | chromosome 10 open reading ... | XM_011519441.1 | 43.9% | 43.7% | (many diffs) |
| 8 | human | 256815 | C10orf67 | chromosome 10 open reading ... | XM_011519440.1 | 43.8% | 43.6% | (many diffs) |
| 9 | human | 256815 | C10orf67 | chromosome 10 open reading ... | XR_930487.1 | 37.8% | (many diffs) | |
| 10 | human | 256815 | C10orf67 | chromosome 10 open reading ... | NM_001371909.1 | 33.2% | 33% | (many diffs) |
| 11 | human | 256815 | C10orf67 | chromosome 10 open reading ... | NM_001365862.2 | 33.1% | 33% | (many diffs) |
| 12 | human | 256815 | C10orf67 | chromosome 10 open reading ... | XR_001747077.2 | 16.4% | (many diffs) | |
| 13 | human | 256815 | C10orf67 | chromosome 10 open reading ... | XM_017016031.1 | 13.4% | 13.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 618
- ORF length:
- 552
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC CTTGGTCCGG GATCGCAGGG CTCATTATGT CATGAGCATA GTTATTAGAT 121 GGGTTCACTG CTTTTCCTCC TCCTTGAGGG GGACCTTTGG CACACGCTGG GAGGCCATGA 181 AAGCCAAGGC CACCGAGCTG CGTGTCTGCT GCGCGCGTAG GAAGCGAGAA GCTCGGGAAT 241 TCAAGCCCCC GCAAATGCGC GGGTCCACGA GACTTAACAT TTCAGATGAT TTAAAGATTG 301 GCTTTTTCAG CACAGACCAT GCCACTCAAA CTGATTCCAG TGAAATACTG TCAGTAAAAG 361 AATTGAGTTC ATCTACGCAA AAGTTAGCAC AGATGATGAA ATCCCTCCAG GTAGATTTTG 421 GGTTCCTCAA ACAATTGCTT CAGTTGAAGT TTGAGGACCG ACTGAAAGAG GAATCTTTGA 481 GTCTCTTCAC CATTCTGCAT GACAGGATCC TAGAAATTGA AAAGCATTAT CAACAGAATG 541 AGGATAAGAT GAGAAAATCC TTCAATCAGC AGTTAGCTGA TGCCATAGCT GTTATCAAAG 601 GAATGTACCA GCCACTGTGC CCAACTTTCT TGTACAAAGT TGGcattata agaaagcatt 661 gcttatcaat ttgttgcaac gaac