Construct: ORF ccsbBroadEn_10638
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015233.1_s300c1, BRDN0000456015
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CATSPER2P1 (440278)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 117155 | CATSPER2 | cation channel sperm associ... | NR_110319.1 | 11.9% | (many diffs) | |
| 2 | human | 117155 | CATSPER2 | cation channel sperm associ... | NM_001282309.3 | 11.5% | 8.6% | (many diffs) |
| 3 | human | 117155 | CATSPER2 | cation channel sperm associ... | NM_172095.4 | 11.5% | 8.6% | (many diffs) |
| 4 | human | 440278 | CATSPER2P1 | cation channel sperm associ... | NR_002318.2 | 11.4% | 1_256del;446_1649del | |
| 5 | human | 117155 | CATSPER2 | cation channel sperm associ... | NM_001282310.2 | 11.4% | 8.5% | (many diffs) |
| 6 | human | 110006325 | PPIP5K1P1-CATSPER2 | PPIP5K1P1-CATSPER2 readthrough | NR_146339.1 | 3.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 255
- ORF length:
- 189
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC CGCTTACCAA CAAGAAGGGC AGATGCAGCT TCCCCGAGCT GATGCCATTC 121 GTTCACGTCT CATCGATACT TTCTCTCTCA TCGAGCATTT GCAAGGCTTG AGCCAAGCTG 181 TGCTGCGACA CACTATCAGG AGTTACTTGA TCCTTCCCGC CAGAAGAAAC TTATGTTGGG 241 AGATCAACAC CAGCTACCCA ACTTTCTTGT ACAAAGTTGG cattataaga aagcattgct 301 tatcaatttg ttgcaacgaa c