Construct: ORF ccsbBroadEn_10685
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002183.1_s300c1, BRDN0000393765
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ARNT (405)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 405 | ARNT | aryl hydrocarbon receptor n... | XM_017001294.1 | 55% | 54.8% | (many diffs) |
| 2 | human | 405 | ARNT | aryl hydrocarbon receptor n... | XM_005245157.1 | 54.9% | 54.7% | (many diffs) |
| 3 | human | 405 | ARNT | aryl hydrocarbon receptor n... | XM_017001295.1 | 54.2% | 54.1% | (many diffs) |
| 4 | human | 405 | ARNT | aryl hydrocarbon receptor n... | XM_017001292.1 | 53.7% | 53.5% | (many diffs) |
| 5 | human | 405 | ARNT | aryl hydrocarbon receptor n... | XM_017001296.1 | 53% | 52.7% | (many diffs) |
| 6 | human | 405 | ARNT | aryl hydrocarbon receptor n... | NM_001286036.2 | 52.5% | 52.3% | (many diffs) |
| 7 | human | 405 | ARNT | aryl hydrocarbon receptor n... | XM_005245151.2 | 52.4% | 52.2% | (many diffs) |
| 8 | human | 405 | ARNT | aryl hydrocarbon receptor n... | NM_001668.4 | 52.3% | 52.2% | (many diffs) |
| 9 | human | 405 | ARNT | aryl hydrocarbon receptor n... | XM_017001293.1 | 51.8% | 51.6% | (many diffs) |
| 10 | human | 405 | ARNT | aryl hydrocarbon receptor n... | XM_005245153.1 | 51.7% | 51.5% | (many diffs) |
| 11 | human | 405 | ARNT | aryl hydrocarbon receptor n... | XM_017001288.2 | 51.3% | 51.1% | (many diffs) |
| 12 | human | 405 | ARNT | aryl hydrocarbon receptor n... | NM_001350224.2 | 51.2% | 51% | (many diffs) |
| 13 | human | 405 | ARNT | aryl hydrocarbon receptor n... | NM_001286035.2 | 50.6% | 50.4% | (many diffs) |
| 14 | human | 405 | ARNT | aryl hydrocarbon receptor n... | XM_017001289.1 | 50.6% | 50.4% | (many diffs) |
| 15 | human | 405 | ARNT | aryl hydrocarbon receptor n... | NM_001197325.2 | 50.5% | 50.3% | (many diffs) |
| 16 | human | 405 | ARNT | aryl hydrocarbon receptor n... | NM_178427.3 | 50.5% | 50.3% | (many diffs) |
| 17 | human | 405 | ARNT | aryl hydrocarbon receptor n... | NM_001350226.2 | 50.1% | 46.8% | (many diffs) |
| 18 | human | 405 | ARNT | aryl hydrocarbon receptor n... | NM_001350225.2 | 50.1% | 47.1% | (many diffs) |
| 19 | human | 405 | ARNT | aryl hydrocarbon receptor n... | XM_011509543.3 | 50.1% | 47.1% | (many diffs) |
| 20 | human | 405 | ARNT | aryl hydrocarbon receptor n... | XM_017001291.1 | 49.4% | 49.2% | (many diffs) |
| 21 | human | 405 | ARNT | aryl hydrocarbon receptor n... | XM_017001290.2 | 49.3% | 49.1% | (many diffs) |
| 22 | human | 405 | ARNT | aryl hydrocarbon receptor n... | XM_011509547.2 | 48.3% | 45.3% | (many diffs) |
| 23 | human | 405 | ARNT | aryl hydrocarbon receptor n... | XM_011509545.3 | 48.2% | 45.2% | (many diffs) |
| 24 | human | 405 | ARNT | aryl hydrocarbon receptor n... | XM_011509546.2 | 47.8% | 46.7% | (many diffs) |
| 25 | mouse | 11863 | Arnt | aryl hydrocarbon receptor n... | XM_006500933.2 | 90.6% | 94.9% | (many diffs) |
| 26 | mouse | 11863 | Arnt | aryl hydrocarbon receptor n... | XM_006500930.3 | 48.2% | 50.2% | (many diffs) |
| 27 | mouse | 11863 | Arnt | aryl hydrocarbon receptor n... | NM_001037737.2 | 48.1% | 50.1% | (many diffs) |
| 28 | mouse | 11863 | Arnt | aryl hydrocarbon receptor n... | XM_006500931.3 | 46.3% | 48.3% | (many diffs) |
| 29 | mouse | 11863 | Arnt | aryl hydrocarbon receptor n... | NM_009709.4 | 46.3% | 48.2% | (many diffs) |
| 30 | mouse | 11863 | Arnt | aryl hydrocarbon receptor n... | XM_011239998.2 | 40.7% | 42.8% | (many diffs) |
| 31 | mouse | 11863 | Arnt | aryl hydrocarbon receptor n... | XR_001783644.1 | 28.1% | (many diffs) | |
| 32 | mouse | 11863 | Arnt | aryl hydrocarbon receptor n... | XR_001783643.1 | 26.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1314
- ORF length:
- 1248
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC GGCGACTACT GCCAACCCCG AAATGACATC AGATGTACCA TCACTGGGTC 121 CAGCCATTGC CTCTGGAAAC TCTGGACCTG GAATTCAAGG TGGAGGAGCC ATTGTCCAGA 181 GGGCTATTAA GCGGCGACCA GGGCTGGATT TTGATGATGA TGGAGAAGGG AACAGTAAAT 241 TTTTGAGGTG TGATGATGAT CAGATGTCTA ACGATAAGGA GCGGTTTGCC AGGTCGGATG 301 ATGAGCAGAG CTCTGCGGAT AAAGAGAGAC TTGCAAGGGA AAATCACAGT GAAATTGAAC 361 GGCGGCGACG GAACAAGATG ACAGCCTACA TCACAGAACT GTCAGATATG GTACCCACAT 421 GTAGTGCCCT GGCTCGAAAA CCAGACAAGC TAACCATCTT ACGCATGGCA GTTTCTCACA 481 TGAAGTCCTT GCGGGGAACT GGCAACACAT CCACTGATGG CTCCTATAAG CCGTCTTTCC 541 TCACTGATCA GGAACTGAAA CATTTGATCT TGGAGGCAGC AGATGGCTTT CTGTTTATTG 601 TCTCATGTGA GACAGGCAGG GTGGTGTATG TCTCTGACTC CGTGACTCCT GTTTTGAACC 661 AGCAACAGTC TGAATGGTTT GGCAGCACAC TCTATGATCA GGTGCACCCA GATGATGTGG 721 ATAAACTTCG TGAGCAGCTT TCCACTTCAG AAAATGCCCT GACAGGGCGT ATCCTGGATC 781 TAAAGACTGG AACAGTGAAA AAGGAAGGTC AGCAGTCTTC CATGAGAATG TGTATGGGCT 841 CAAGGAGATC GTTTATTTGC CGAATGAGGT GTGGCAGTAG CTCTGTGGAC CCAGTTTCTG 901 TGAATAGGCT GAGCTTTGTG AGGAACAGAT GCAGGAATGG ACTTGGCTCT GTAAAGGATG 961 GGGAACCTCA CTTCGTGGTG GTCCACTGCA CAGGCTACAT CAAGGCCTGG CCCCCAGCAG 1021 GTGTTTCCCT CCCAGATGAT GACCCAGAGG CTGGCCAGGG AAGCAAGTTT TGCCTAGTGG 1081 CCATTGGCAG ATTGCAGGTA ACTAGTTCTC CCAACTGTAC AGACATGAGT AATGTTTGTC 1141 AACCAACAGA GTTAATCTCC CGACACAACA TTGAGGGTAT CTTCACTTTT GTGGATCACC 1201 GCTGTGTGGC TACTGTTGGC TACCAGCCAC AGGAACTCTT AGGAAAGAAT ATTGTAGAAT 1261 TCTGTCATCC TGAAGACCAG CAGCTTCTAA GAGACAGCTT CCAACAGGAA CTCTACCCAA 1321 CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac