Transcript: Mouse XR_001783643.1

PREDICTED: Mus musculus aryl hydrocarbon receptor nuclear translocator (Arnt), transcript variant X4, misc_RNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Arnt (11863)
Length:
4285
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001783643.1
NBCI Gene record:
Arnt (11863)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XR_001783643.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000238089 TAGGTCCGACAGCCAATTTAT pLKO_005 1616 3UTR 100% 15.000 21.000 N Arnt n/a
2 TRCN0000238092 TGTTGTACAGAGGGCTATTAA pLKO_005 270 3UTR 100% 15.000 21.000 N Arnt n/a
3 TRCN0000079931 CCAAGACTCGTTCTTCCCAAT pLKO.1 2041 3UTR 100% 4.050 5.670 N Arnt n/a
4 TRCN0000079932 CTGTAACCATTGTCCAGCCAT pLKO.1 1891 3UTR 100% 2.640 3.696 N Arnt n/a
5 TRCN0000238093 GATGGGCTGGCCAGCTATAAT pLKO_005 1717 3UTR 100% 15.000 10.500 N Arnt n/a
6 TRCN0000238091 AGAATCTGACAGGCACTAATT pLKO_005 2731 3UTR 100% 13.200 9.240 N Arnt n/a
7 TRCN0000238090 CCGATCTAAGACCCGAGAATG pLKO_005 1452 3UTR 100% 10.800 7.560 N Arnt n/a
8 TRCN0000079929 CCAGACAAGCTAACCATCTTA pLKO.1 541 3UTR 100% 5.625 3.938 N Arnt n/a
9 TRCN0000079930 CCGACACAACATTGAAGGGAT pLKO.1 1260 3UTR 100% 2.640 1.848 N Arnt n/a
10 TRCN0000079928 TGGGGGGAAATCACTGTTTGT pLKO.1 2462 3UTR 100% 0.000 0.000 N Arnt n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001783643.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_10685 pDONR223 100% 26.6% None (many diffs) n/a
2 ccsbBroad304_10685 pLX_304 0% 26.6% V5 (many diffs) n/a
3 TRCN0000472968 GCATTATGGCTAACTTTTGTCCAC pLX_317 40.6% 26.6% V5 (many diffs) n/a
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