Construct: ORF ccsbBroadEn_10687

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002104.1_s300c1, BRDN0000385439
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZFHX3 (463)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 463 ZFHX3 zinc finger homeobox 3 NM_001164766.2 31.7% 31.6% (many diffs)
2 human 463 ZFHX3 zinc finger homeobox 3 XM_017023251.2 31.3% 31.3% (many diffs)
3 human 463 ZFHX3 zinc finger homeobox 3 XM_024450291.1 31.3% 31.2% (many diffs)
4 human 463 ZFHX3 zinc finger homeobox 3 NM_006885.4 23.8% 23.8% (many diffs)
5 human 463 ZFHX3 zinc finger homeobox 3 XM_005255957.4 23.8% 23.8% (many diffs)
6 mouse 11906 Zfhx3 zinc finger homeobox 3 XM_006530586.3 27.8% 29.5% (many diffs)
7 mouse 11906 Zfhx3 zinc finger homeobox 3 XM_011248284.2 27.8% 29.5% (many diffs)
8 mouse 11906 Zfhx3 zinc finger homeobox 3 NM_007496.2 20.9% 22.3% (many diffs)
9 mouse 11906 Zfhx3 zinc finger homeobox 3 XM_006530585.3 20.9% 22.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2724
ORF length:
2658
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGCG GCTCGGGGGC GGGCAGCTGG TGTCAGAGGA GCTGATGAAC CTGGGCGAGA
121GCTTCATCCA GACCAACGAC CCGTCGCTGA AGCTCTTCCA GTGCGCCGTC TGCAACAAGT
181TCACGACGGA CAACCTGGAC ATGCTGGGCC TGCACATGAA CGTGGAGCGC AGCCTGTCGG
241AGGACGAGTG GAAGGCGGTG ATGGGGGACT CATACCAGTG CAAGCTCTGC CGCTACAACA
301CCCAGCTCAA GGCCAACTTC CAGCTGCACT GCAAGACAGA CAAGCACGTG CAGAAGTACC
361AGCTGGTGGC CCACATCAAG GAGGGCGGCA AGGCCAACGA GTGGAGGCTC AAGTGTGTGG
421CCATCGGCAA CCCCGTGCAC CTCAAGTGCA ACGCCTGTGA CTACTACACC AACAGCCTGG
481AGAAGCTGCG GCTGCACACG GTCAACTCCA GGCACGAGGC CAGCCTGAAG TTGTACAAGC
541ACCTGCAGCA GCATGAGAGT GGTGTAGAAG GTGAGAGCTG CTACTACCAC TGCGTTCTGT
601GCAACTACTC CACCAAGGCC AAGCTCAACC TCATCCAGCA TGTGCGCTCC ATGAAGCACC
661AGCGAAGCGA GAGCCTGCGA AAGCTGCAGC GGCTGCAGAA GGGCCTTCCA GAGGAGGACG
721AGGACCTGGG GCAGATCTTC ACCATCCGCA GGTGCCCCTC CACGGACCCA GAAGAAGCCA
781TTGAAGATGT TGAAGGACCC AGTGAAACAG CTGCTGATCC AGAGGAGCTT GCTAAGGACC
841AAGAGGGCGG AGCATCGTCC AGCCAAGCAG AGAAGGAGCT GACAGATTCT CCTGCAACCT
901CCAAACGCAT CTCCTTCCCA GGTAGCTCAG AGTCTCCCCT CTCTTCGAAG CGACCAAAAA
961CAGCTGAGGA GATCAAACCG GAGCAGATGT ACCAGTGTCC CTACTGCAAG TACAGTAATG
1021CCGATGTCAA CCGGCTCCGG GTGCATGCCA TGACGCAGCA CTCGGTGCAA CCCATGCTTC
1081GCTGCCCCCT GTGCCAGGAC ATGCTCAACA ACAAGATCCA CCTCCAGCTG CACCTCACCC
1141ACCTCCACAG CGTGGCACCT GACTGCGTGG AGAAGCTCAT TATGACGGTG ACCACCCCTG
1201AGATGGTGAT GCCAAGCAGC ATGTTCCTCC CAGCAGCTGT TCCAGATCGA GATGGGAATT
1261CCAATTTGGA AGAGGCAGGA AAGCAGCCTG AAACCTCAGA GGATCTGGGA AAGAACATCT
1321TGCCATCCGC AAGCACAGAG CAAAGCGGAG ATTTGAAACC ATCCCCTGCT GACCCAGGCT
1381CTGTGAGAGA AGACTCAGGC TTCATCTGCT GGAAGAAGGG GTGCAACCAG GTTTTCAAAA
1441CTTCTGCTGC CCTTCAGACG CATTTTAATG AAGTGCATGC CAAGAGGCCT CAGCTGCCGG
1501TGTCAGATCG CCATGTGTAC AAGTACCGCT GTAATCAGTG TAGCCTGGCC TTCAAGACCA
1561TTGAAAAGTT GCAGCTCCAT TCTCAGTACC ATGTGATCAG AGCTGCCACC ATGTGCTGTC
1621TTTGTCAGCG CAGTTTCCGA ACTTTCCAGG CTCTGAAGAA GCACCTTGAG ACAAGCCACC
1681TGGAGCTGAG TGAGGCTGAC ATCCAACAGC TTTATGGTGG CCTGCTGGCC AATGGGGACC
1741TCCTGGCAAT GGGAGACCCC ACTCTGGCTG AGGACCATAC CATAATTGTT GAGGAAGACA
1801AGGAGGAAGA GAGTGACTTG GAAGATAAAC AGAGCCCAAC GGGCAGTGAC TCTGGGTCAG
1861TACAAGAAGA CTCGGGCTCA GAGCCAAAGA GAGCTCTGCC TTTCAGAAAA GGTCCCAATT
1921TTACTATGGA AAAGTTCCTA GACCCTTCTC GCCCTTACAA GTGTACCGTC TGCAAGGAAT
1981CTTTCACTCA AAAGAATATC CTGCTAGTAC ACTACAATTC TGTCTCCCAC CTGCATAAGT
2041TAAAGAGAGC CCTTCAAGAA TCAGCAACCG GTCAGCCAGA ACCCACCAGC AGCCCAGACA
2101ACAAACCTTT TAAGTGTAAC ACTTGTAATG TGGCCTACAG CCAGAGTTCC ACTCTGGAGA
2161TCCATATGAG GTCTGTGTTA CATCAAACCA AGGCCCGGGC AGCCAAGCTG GAGGCTGCAA
2221GTGGCAGCAG CAATGGGACT GGGAACAGCA GCAGTATTTC CTTGAGCTCC TCCACGCCAA
2281GTCCTGTGAG CACCAGTGGC AGTAACACCT TTACCACCTC CAATCCAAGC AGTGCTGGCA
2341TTGCTCCAAG CTCTAACTTA CTAAGCCAAG TGCCCACTGA GAGTGTAGGG ATGCCACCCC
2401TGGGGAATCC TATTGGTGCC AACATTGCTT CCCCTTCAGA GCCCAAAGAG GCCAATCGGA
2461AGAAACTGGC AGATATGATT GCATCCAGGC AGCAGCAACA ACAGCAGCAG CAACAGCAAC
2521AACAACAACA ACAACAACAA CAACAAGCAC AAACGCTGGC CCAGGCCCAG GCTCAAGTTC
2581AAGCTCACCT GCAGCAGGAG CTGCAGCAAC AGGCTGCCCT GATCCAGTCT CAGCTGTTTA
2641ACCCCACCCT CCTTCCTCAC TTCCCCATGA CAACTGAGAC CCTGCTGCAA CTACAGCAGC
2701AGCAGCACCC CCTCTACCCC CTCTACCCAA CTTTCTTGTA CAAAGTtggc attataagaa
2761agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)