Construct: ORF ccsbBroadEn_10687
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002104.1_s300c1, BRDN0000385439
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZFHX3 (463)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 463 | ZFHX3 | zinc finger homeobox 3 | NM_001164766.2 | 31.7% | 31.6% | (many diffs) |
| 2 | human | 463 | ZFHX3 | zinc finger homeobox 3 | XM_017023251.2 | 31.3% | 31.3% | (many diffs) |
| 3 | human | 463 | ZFHX3 | zinc finger homeobox 3 | XM_024450291.1 | 31.3% | 31.2% | (many diffs) |
| 4 | human | 463 | ZFHX3 | zinc finger homeobox 3 | NM_006885.4 | 23.8% | 23.8% | (many diffs) |
| 5 | human | 463 | ZFHX3 | zinc finger homeobox 3 | XM_005255957.4 | 23.8% | 23.8% | (many diffs) |
| 6 | mouse | 11906 | Zfhx3 | zinc finger homeobox 3 | XM_006530586.3 | 27.8% | 29.5% | (many diffs) |
| 7 | mouse | 11906 | Zfhx3 | zinc finger homeobox 3 | XM_011248284.2 | 27.8% | 29.5% | (many diffs) |
| 8 | mouse | 11906 | Zfhx3 | zinc finger homeobox 3 | NM_007496.2 | 20.9% | 22.3% | (many diffs) |
| 9 | mouse | 11906 | Zfhx3 | zinc finger homeobox 3 | XM_006530585.3 | 20.9% | 22.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2724
- ORF length:
- 2658
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCG GCTCGGGGGC GGGCAGCTGG TGTCAGAGGA GCTGATGAAC CTGGGCGAGA 121 GCTTCATCCA GACCAACGAC CCGTCGCTGA AGCTCTTCCA GTGCGCCGTC TGCAACAAGT 181 TCACGACGGA CAACCTGGAC ATGCTGGGCC TGCACATGAA CGTGGAGCGC AGCCTGTCGG 241 AGGACGAGTG GAAGGCGGTG ATGGGGGACT CATACCAGTG CAAGCTCTGC CGCTACAACA 301 CCCAGCTCAA GGCCAACTTC CAGCTGCACT GCAAGACAGA CAAGCACGTG CAGAAGTACC 361 AGCTGGTGGC CCACATCAAG GAGGGCGGCA AGGCCAACGA GTGGAGGCTC AAGTGTGTGG 421 CCATCGGCAA CCCCGTGCAC CTCAAGTGCA ACGCCTGTGA CTACTACACC AACAGCCTGG 481 AGAAGCTGCG GCTGCACACG GTCAACTCCA GGCACGAGGC CAGCCTGAAG TTGTACAAGC 541 ACCTGCAGCA GCATGAGAGT GGTGTAGAAG GTGAGAGCTG CTACTACCAC TGCGTTCTGT 601 GCAACTACTC CACCAAGGCC AAGCTCAACC TCATCCAGCA TGTGCGCTCC ATGAAGCACC 661 AGCGAAGCGA GAGCCTGCGA AAGCTGCAGC GGCTGCAGAA GGGCCTTCCA GAGGAGGACG 721 AGGACCTGGG GCAGATCTTC ACCATCCGCA GGTGCCCCTC CACGGACCCA GAAGAAGCCA 781 TTGAAGATGT TGAAGGACCC AGTGAAACAG CTGCTGATCC AGAGGAGCTT GCTAAGGACC 841 AAGAGGGCGG AGCATCGTCC AGCCAAGCAG AGAAGGAGCT GACAGATTCT CCTGCAACCT 901 CCAAACGCAT CTCCTTCCCA GGTAGCTCAG AGTCTCCCCT CTCTTCGAAG CGACCAAAAA 961 CAGCTGAGGA GATCAAACCG GAGCAGATGT ACCAGTGTCC CTACTGCAAG TACAGTAATG 1021 CCGATGTCAA CCGGCTCCGG GTGCATGCCA TGACGCAGCA CTCGGTGCAA CCCATGCTTC 1081 GCTGCCCCCT GTGCCAGGAC ATGCTCAACA ACAAGATCCA CCTCCAGCTG CACCTCACCC 1141 ACCTCCACAG CGTGGCACCT GACTGCGTGG AGAAGCTCAT TATGACGGTG ACCACCCCTG 1201 AGATGGTGAT GCCAAGCAGC ATGTTCCTCC CAGCAGCTGT TCCAGATCGA GATGGGAATT 1261 CCAATTTGGA AGAGGCAGGA AAGCAGCCTG AAACCTCAGA GGATCTGGGA AAGAACATCT 1321 TGCCATCCGC AAGCACAGAG CAAAGCGGAG ATTTGAAACC ATCCCCTGCT GACCCAGGCT 1381 CTGTGAGAGA AGACTCAGGC TTCATCTGCT GGAAGAAGGG GTGCAACCAG GTTTTCAAAA 1441 CTTCTGCTGC CCTTCAGACG CATTTTAATG AAGTGCATGC CAAGAGGCCT CAGCTGCCGG 1501 TGTCAGATCG CCATGTGTAC AAGTACCGCT GTAATCAGTG TAGCCTGGCC TTCAAGACCA 1561 TTGAAAAGTT GCAGCTCCAT TCTCAGTACC ATGTGATCAG AGCTGCCACC ATGTGCTGTC 1621 TTTGTCAGCG CAGTTTCCGA ACTTTCCAGG CTCTGAAGAA GCACCTTGAG ACAAGCCACC 1681 TGGAGCTGAG TGAGGCTGAC ATCCAACAGC TTTATGGTGG CCTGCTGGCC AATGGGGACC 1741 TCCTGGCAAT GGGAGACCCC ACTCTGGCTG AGGACCATAC CATAATTGTT GAGGAAGACA 1801 AGGAGGAAGA GAGTGACTTG GAAGATAAAC AGAGCCCAAC GGGCAGTGAC TCTGGGTCAG 1861 TACAAGAAGA CTCGGGCTCA GAGCCAAAGA GAGCTCTGCC TTTCAGAAAA GGTCCCAATT 1921 TTACTATGGA AAAGTTCCTA GACCCTTCTC GCCCTTACAA GTGTACCGTC TGCAAGGAAT 1981 CTTTCACTCA AAAGAATATC CTGCTAGTAC ACTACAATTC TGTCTCCCAC CTGCATAAGT 2041 TAAAGAGAGC CCTTCAAGAA TCAGCAACCG GTCAGCCAGA ACCCACCAGC AGCCCAGACA 2101 ACAAACCTTT TAAGTGTAAC ACTTGTAATG TGGCCTACAG CCAGAGTTCC ACTCTGGAGA 2161 TCCATATGAG GTCTGTGTTA CATCAAACCA AGGCCCGGGC AGCCAAGCTG GAGGCTGCAA 2221 GTGGCAGCAG CAATGGGACT GGGAACAGCA GCAGTATTTC CTTGAGCTCC TCCACGCCAA 2281 GTCCTGTGAG CACCAGTGGC AGTAACACCT TTACCACCTC CAATCCAAGC AGTGCTGGCA 2341 TTGCTCCAAG CTCTAACTTA CTAAGCCAAG TGCCCACTGA GAGTGTAGGG ATGCCACCCC 2401 TGGGGAATCC TATTGGTGCC AACATTGCTT CCCCTTCAGA GCCCAAAGAG GCCAATCGGA 2461 AGAAACTGGC AGATATGATT GCATCCAGGC AGCAGCAACA ACAGCAGCAG CAACAGCAAC 2521 AACAACAACA ACAACAACAA CAACAAGCAC AAACGCTGGC CCAGGCCCAG GCTCAAGTTC 2581 AAGCTCACCT GCAGCAGGAG CTGCAGCAAC AGGCTGCCCT GATCCAGTCT CAGCTGTTTA 2641 ACCCCACCCT CCTTCCTCAC TTCCCCATGA CAACTGAGAC CCTGCTGCAA CTACAGCAGC 2701 AGCAGCACCC CCTCTACCCC CTCTACCCAA CTTTCTTGTA CAAAGTtggc attataagaa 2761 agcattgctt atcaatttgt tgcaacgaac