Construct: ORF ccsbBroadEn_10691
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006515.1_s300c1, BRDN0000396928
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 527 | ATP6V0C | ATPase H+ transporting V0 s... | NM_001198569.1 | 72.2% | 72.2% | 1_129del |
| 2 | human | 527 | ATP6V0C | ATPase H+ transporting V0 s... | NM_001694.4 | 72.2% | 72.2% | 1_129del |
| 3 | mouse | 11984 | Atp6v0c | ATPase, H+ transporting, ly... | NM_009729.3 | 63.6% | 69% | (many diffs) |
| 4 | mouse | 100039636 | Atp6v0c-ps2 | ATPase, H+ transporting, ly... | NR_037854.1 | 26.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 402
- ORF length:
- 336
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTC TGTCATGCGG CCGGAGCAGA TCATGAAGTC CATCATCCCA GTGGTCATGG 121 CTGGCATCAT CGCCATCTAC GGCCTGGTGG TGGCAGTCCT CATCGCCAAC TCCCTGAATG 181 ACGACATCAG CCTCTACAAG AGCTTCCTCC AGCTGGGCGC CGGCCTGAGC GTGGGCCTGA 241 GCGGCCTGGC AGCCGGCTTT GCCATCGGCA TCGTGGGGGA CGCTGGCGTG CGGGGCACCG 301 CCCAGCAGCC CCGACTATTC GTGGGCATGA TCCTGATTCT CATCTTCGCC GAGGTGCTCG 361 GCCTCTACGG TCTCATCGTC GCCCTCATCC TCTCCACAAA GTACCCAACT TTCTTGTACA 421 AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac