Construct: ORF ccsbBroadEn_10696

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015075.1_s300c1, BRDN0000389665
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CEACAM1 (634)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 634 CEACAM1 CEA cell adhesion molecule 1 NM_001205344.2 100% 100%
2 human 634 CEACAM1 CEA cell adhesion molecule 1 NM_001024912.3 98.4% 98% 1374_1378delCAGCT;1392_1393insTGACCCACCTAACAAGA
3 human 634 CEACAM1 CEA cell adhesion molecule 1 NM_001712.5 88.9% 87.6% 1374_1431del;1463_1578del
4 human 634 CEACAM1 CEA cell adhesion molecule 1 NM_001184816.2 77.9% 77.3% 958_959ins288;1086_1090delCAGCT;1104_1105insTGACCCACCTAACAAGA
5 human 634 CEACAM1 CEA cell adhesion molecule 1 NM_001184815.2 75.1% 70.9% (many diffs)
6 human 634 CEACAM1 CEA cell adhesion molecule 1 XM_011527206.2 75% 69.4% 957_958ins134;1053_1054ins217
7 human 634 CEACAM1 CEA cell adhesion molecule 1 NM_001184813.2 70.7% 69.2% 958_959ins288;1086_1143del;1175_1290del
8 human 1048 CEACAM5 CEA cell adhesion molecule 5 XM_011526322.2 66.1% 58.4% (many diffs)
9 human 4680 CEACAM6 CEA cell adhesion molecule 6 NM_002483.7 66% 61.3% (many diffs)
10 human 1088 CEACAM8 CEA cell adhesion molecule 8 XM_017026194.1 65.3% 53.3% (many diffs)
11 human 1088 CEACAM8 CEA cell adhesion molecule 8 NM_001816.4 65% 57.6% (many diffs)
12 human 1088 CEACAM8 CEA cell adhesion molecule 8 XM_017026195.1 65% 57.6% (many diffs)
13 human 4680 CEACAM6 CEA cell adhesion molecule 6 XM_011526990.2 62.1% 58.3% (many diffs)
14 human 1088 CEACAM8 CEA cell adhesion molecule 8 XM_017026196.1 61.9% 54.3% (many diffs)
15 human 1048 CEACAM5 CEA cell adhesion molecule 5 XM_017026146.2 56.9% 50.1% (many diffs)
16 human 1088 CEACAM8 CEA cell adhesion molecule 8 XM_011526341.1 48.6% 41.7% (many diffs)
17 human 1088 CEACAM8 CEA cell adhesion molecule 8 XM_011526342.1 48.6% 41.7% (many diffs)
18 human 1088 CEACAM8 CEA cell adhesion molecule 8 XM_017026198.1 48.6% 41.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1470
ORF length:
1404
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGG GCACCTCTCA GCCCCACTTC ACAGAGTGCG TGTACCCTGG CAGGGGCTTC
121TGCTCACAGC CTCACTTCTA ACCTTCTGGA ACCCGCCCAC CACTGCCCAG CTCACTACTG
181AATCCATGCC ATTCAATGTT GCAGAGGGGA AGGAGGTTCT TCTCCTTGTC CACAATCTGC
241CCCAGCAACT TTTTGGCTAC AGCTGGTACA AAGGGGAAAG AGTGGATGGC AACCGTCAAA
301TTGTAGGATA TGCAATAGGA ACTCAACAAG CTACCCCAGG GCCCGCAAAC AGCGGTCGAG
361AGACAATATA CCCCAATGCA TCCCTGCTGA TCCAGAACGT CACCCAGAAT GACACAGGAT
421TCTACACCCT ACAAGTCATA AAGTCAGATC TTGTGAATGA AGAAGCAACT GGACAGTTCC
481ATGTATACCC GGAGCTGCCC AAGCCCTCCA TCTCCAGCAA CAACTCCAAC CCTGTGGAGG
541ACAAGGATGC TGTGGCCTTC ACCTGTGAAC CTGAGACTCA GGACACAACC TACCTGTGGT
601GGATAAACAA TCAGAGCCTC CCGGTCAGTC CCAGGCTGCA GCTGTCCAAT GGCAACAGGA
661CCCTCACTCT ACTCAGTGTC ACAAGGAATG ACACAGGACC CTATGAGTGT GAAATACAGA
721ACCCAGTGAG TGCGAACCGC AGTGACCCAG TCACCTTGAA TGTCACCTAT GGCCCGGACA
781CCCCCACCAT TTCCCCTTCA GACACCTATT ACCGTCCAGG GGCAAACCTC AGCCTCTCCT
841GCTATGCAGC CTCTAACCCA CCTGCACAGT ACTCCTGGCT TATCAATGGA ACATTCCAGC
901AAAGCACACA AGAGCTCTTT ATCCCTAACA TCACTGTGAA TAATAGTGGA TCCTATACCT
961GCCACGCCAA TAACTCAGTC ACTGGCTGCA ACAGGACCAC AGTCAAGACG ATCATAGTCA
1021CTGAGCTAAG TCCAGTAGTA GCAAAGCCCC AAATCAAAGC CAGCAAGACC ACAGTCACAG
1081GAGATAAGGA CTCTGTGAAC CTGACCTGCT CCACAAATGA CACTGGAATC TCCATCCGTT
1141GGTTCTTCAA AAACCAGAGT CTCCCGTCCT CGGAGAGGAT GAAGCTGTCC CAGGGCAACA
1201CCACCCTCAG CATAAACCCT GTCAAGAGGG AGGATGCTGG GACGTATTGG TGTGAGGTCT
1261TCAACCCAAT CAGTAAGAAC CAAAGCGACC CCATCATGCT GAACGTAAAC TATAATGCTC
1321TACCACAAGA AAATGGCCTC TCACCTGGGG CCATTGCTGG CATTGTGATT GGAGTAGTGG
1381CCCTGGTTGC TCTGATAGCA GTAGCCCTGG CATGTTTTCT GCATTTCGGG AAGACCGGCA
1441GGACCACTCC AATGACCCAC CTAACAAGAT GCCCAACTTT CTTGTACAAA GTtggcatta
1501taagaaagca ttgcttatca atttgttgca acgaac

Download FASTA (ORF) (Full)

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