Transcript: Human XM_017026198.1

PREDICTED: Homo sapiens CEA cell adhesion molecule 8 (CEACAM8), transcript variant X7, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
CEACAM8 (1088)
Length:
1157
CDS:
103..870

Additional Resources:

NCBI RefSeq record:
XM_017026198.1
NBCI Gene record:
CEACAM8 (1088)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017026198.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000425965 GATGCCAACCGTCGAATTATA pLKO_005 322 CDS 100% 15.000 10.500 N CEACAM8 n/a
2 TRCN0000057834 CCTACAAGTCATAAAGCTAAA pLKO.1 465 CDS 100% 10.800 7.560 N CEACAM8 n/a
3 TRCN0000057837 CGTGGCTACAACTGGTACAAA pLKO.1 289 CDS 100% 5.625 3.375 N CEACAM8 n/a
4 TRCN0000183713 GTTCTTCTACTTGTCCACAAT pLKO.1 253 CDS 100% 4.950 2.475 Y PSG8 n/a
5 TRCN0000156672 GTCACCCTGAATGTCCTCTAT pLKO.1 787 CDS 100% 4.950 2.475 Y PSG5 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017026198.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_00297 pDONR223 100% 73% 68.6% None 703_704ins178;765_766ins104 n/a
2 ccsbBroad304_00297 pLX_304 0% 73% 68.6% V5 703_704ins178;765_766ins104 n/a
3 TRCN0000479233 AGCAATCTTACCGGAGCAGTTACA pLX_317 42.2% 73% 68.6% V5 703_704ins178;765_766ins104 n/a
4 ccsbBroadEn_10696 pDONR223 100% 48.6% 41.7% None (many diffs) n/a
5 ccsbBroad304_10696 pLX_304 0% 48.6% 41.7% V5 (many diffs) n/a
6 TRCN0000478295 GATATACCGAACGCATACGGCCGG pLX_317 21.8% 48.6% 41.7% V5 (many diffs) n/a
7 ccsbBroadEn_14581 pDONR223 84% 31.6% 26.2% None (many diffs) n/a
8 ccsbBroad304_14581 pLX_304 0% 31.6% 26.2% V5 (many diffs) n/a
Download CSV