Transcript: Human XM_011526990.2

PREDICTED: Homo sapiens CEA cell adhesion molecule 6 (CEACAM6), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
CEACAM6 (4680)
Length:
2478
CDS:
111..1085

Additional Resources:

NCBI RefSeq record:
XM_011526990.2
NBCI Gene record:
CEACAM6 (4680)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011526990.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000424513 GATGATGCTGTCATTAGTATT pLKO_005 1403 3UTR 100% 13.200 18.480 N CEACAM6 n/a
2 TRCN0000423234 TAGCTTCAGAGGGTAACTTAA pLKO_005 1434 3UTR 100% 13.200 10.560 N CEACAM6 n/a
3 TRCN0000062298 CCCAGAATCGTATTGGTTACA pLKO.1 286 CDS 100% 4.950 3.465 N CEACAM6 n/a
4 TRCN0000434231 GACGTTCCAGCAATCCACACA pLKO_005 935 CDS 100% 2.640 1.848 N CEACAM6 n/a
5 TRCN0000062301 TCGTATTGGTTACAGCTGGTA pLKO.1 293 CDS 100% 2.640 1.848 N CEACAM6 n/a
6 TRCN0000413145 GAACGATGCAGGATCCTATGA pLKO_005 731 CDS 100% 4.950 2.970 N CEACAM6 n/a
7 TRCN0000426089 ACATGACCCTCACTCTACTCA pLKO_005 700 CDS 100% 3.000 1.800 N CEACAM6 n/a
8 TRCN0000062299 CCAACATCACTGTGAATAATA pLKO.1 970 CDS 100% 15.000 7.500 Y CEACAM6 n/a
9 TRCN0000062302 CCTGCACAGTACTCTTGGTTT pLKO.1 906 CDS 100% 4.950 2.475 Y CEACAM6 n/a
10 TRCN0000156672 GTCACCCTGAATGTCCTCTAT pLKO.1 795 CDS 100% 4.950 2.475 Y PSG5 n/a
11 TRCN0000062300 CCAGAATGACACAGGATTCTA pLKO.1 449 CDS 100% 0.563 0.281 Y CEACAM6 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011526990.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_00297 pDONR223 100% 81% 73% None (many diffs) n/a
2 ccsbBroad304_00297 pLX_304 0% 81% 73% V5 (many diffs) n/a
3 TRCN0000479233 AGCAATCTTACCGGAGCAGTTACA pLX_317 42.2% 81% 73% V5 (many diffs) n/a
4 ccsbBroadEn_10696 pDONR223 100% 62.1% 58.3% None (many diffs) n/a
5 ccsbBroad304_10696 pLX_304 0% 62.1% 58.3% V5 (many diffs) n/a
6 TRCN0000478295 GATATACCGAACGCATACGGCCGG pLX_317 21.8% 62.1% 58.3% V5 (many diffs) n/a
7 ccsbBroadEn_14581 pDONR223 84% 41.6% 38.3% None (many diffs) n/a
8 ccsbBroad304_14581 pLX_304 0% 41.6% 38.3% V5 (many diffs) n/a
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